Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12353 | 3' | -54.7 | NC_003324.1 | + | 22678 | 0.67 | 0.685838 |
Target: 5'- aCGcGGCAGGcaGCCAaaAGGCcGCCGAUCu -3' miRNA: 3'- -GC-UCGUCUaaCGGU--UCUGcCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 31180 | 0.67 | 0.707429 |
Target: 5'- cCGAGCAGcagcgcAUUGCCGcaaGGAcCGGCacggacaaucaGGCCg -3' miRNA: 3'- -GCUCGUC------UAACGGU---UCU-GCCGg----------CUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 30808 | 0.68 | 0.674959 |
Target: 5'- cCGAGCAGc------AGGCGGCCGACg -3' miRNA: 3'- -GCUCGUCuaacgguUCUGCCGGCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 32215 | 0.68 | 0.653093 |
Target: 5'- gGGGCGGcccgGcCCGAGGCGGa-GACCa -3' miRNA: 3'- gCUCGUCuaa-C-GGUUCUGCCggCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 39834 | 0.68 | 0.674959 |
Target: 5'- uCGAGCAcg-UGCCGccGGACaccaaGGCCG-CCa -3' miRNA: 3'- -GCUCGUcuaACGGU--UCUG-----CCGGCuGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 12795 | 0.68 | 0.642126 |
Target: 5'- aCGAGCGca---CUAAGaACGGCUGACCa -3' miRNA: 3'- -GCUCGUcuaacGGUUC-UGCCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 16805 | 0.68 | 0.63115 |
Target: 5'- cCGGGCAGAUUGCCcAGcGCuGCauCGACa -3' miRNA: 3'- -GCUCGUCUAACGGuUC-UGcCG--GCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 48176 | 0.68 | 0.63115 |
Target: 5'- uCGAGCAGca-GCCAcGuCGGCgCGAUCc -3' miRNA: 3'- -GCUCGUCuaaCGGUuCuGCCG-GCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 15591 | 0.68 | 0.674959 |
Target: 5'- -cGGCAGA-UGCCAAGGCGGgagcgaGGCUu -3' miRNA: 3'- gcUCGUCUaACGGUUCUGCCgg----CUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 38006 | 0.68 | 0.642126 |
Target: 5'- gGAGCGG-UUGCggcgcaCGGGGCGcgucaacauuccGCCGACCg -3' miRNA: 3'- gCUCGUCuAACG------GUUCUGC------------CGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 20492 | 0.68 | 0.664041 |
Target: 5'- gGAGCGGGaugUUGCgAuugagcgaGGGCGugcccGCCGACCg -3' miRNA: 3'- gCUCGUCU---AACGgU--------UCUGC-----CGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 53110 | 0.68 | 0.653093 |
Target: 5'- uGAGCAcg--GCC-AGACGGucuggcuccCCGACCg -3' miRNA: 3'- gCUCGUcuaaCGGuUCUGCC---------GGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 16116 | 0.68 | 0.649804 |
Target: 5'- gCGAGguGGUccUGCgCAGGGCgcuucgguagcgggGGCCGcGCCa -3' miRNA: 3'- -GCUCguCUA--ACG-GUUCUG--------------CCGGC-UGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 20787 | 0.68 | 0.620174 |
Target: 5'- --cGcCGGAacgUUGgCGAGGCGGCgGACCg -3' miRNA: 3'- gcuC-GUCU---AACgGUUCUGCCGgCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 32177 | 0.68 | 0.620174 |
Target: 5'- -cAGguGAUUGCCGAcGCGcGUCGugCg -3' miRNA: 3'- gcUCguCUAACGGUUcUGC-CGGCugG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 24556 | 0.68 | 0.642126 |
Target: 5'- aGAGCAG--UGCCGgaAGaucgucaccgcuGCGGgCGACCa -3' miRNA: 3'- gCUCGUCuaACGGU--UC------------UGCCgGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 32033 | 0.69 | 0.565634 |
Target: 5'- uGAGCuGucUGCCGGcGGCGGCucaCGGCCg -3' miRNA: 3'- gCUCGuCuaACGGUU-CUGCCG---GCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 24138 | 0.69 | 0.609209 |
Target: 5'- gCGAGaAGGUaaagcccgccagUGCCGAGAaGGCCG-CCa -3' miRNA: 3'- -GCUCgUCUA------------ACGGUUCUgCCGGCuGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 25696 | 0.69 | 0.598264 |
Target: 5'- -cAGCAGccgUGCCGgcgcAGcaGCGGCCGACa -3' miRNA: 3'- gcUCGUCua-ACGGU----UC--UGCCGGCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 28112 | 0.69 | 0.609209 |
Target: 5'- cCGGGUucucgaucgAGAUauccaacccGCCAAGgcggauGCGGCCGACCu -3' miRNA: 3'- -GCUCG---------UCUAa--------CGGUUC------UGCCGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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