miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 24929 1.12 0.000797
Target:  5'- gCGAGCAGAUUGCCAAGACGGCCGACCu -3'
miRNA:   3'- -GCUCGUCUAACGGUUCUGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 43787 0.79 0.157595
Target:  5'- uCGAGCAGggUGCCGGGAacGCCGGCa -3'
miRNA:   3'- -GCUCGUCuaACGGUUCUgcCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 35455 0.76 0.241521
Target:  5'- cCGAGCAGGcUGCagcAGcACaGGCCGACCa -3'
miRNA:   3'- -GCUCGUCUaACGgu-UC-UG-CCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 48464 0.75 0.287974
Target:  5'- cCGAGCAGGUaggcGCCAAGggcaacuGCGaGCCGGCUu -3'
miRNA:   3'- -GCUCGUCUAa---CGGUUC-------UGC-CGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 49116 0.75 0.288696
Target:  5'- uGAcGC-GAUcGCCAAGAUGGCgGGCCg -3'
miRNA:   3'- gCU-CGuCUAaCGGUUCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 57378 0.74 0.303443
Target:  5'- -cGGCGGAg-GCgAGGGCGGCaCGACCg -3'
miRNA:   3'- gcUCGUCUaaCGgUUCUGCCG-GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 49104 0.74 0.318761
Target:  5'- aGAGguGAgaagcaugGCCGcgaGGGCGGCCGAUg -3'
miRNA:   3'- gCUCguCUaa------CGGU---UCUGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 25540 0.74 0.318761
Target:  5'- aCGAGCAaagcAUgcucGCCAAGugGGUCGGCUg -3'
miRNA:   3'- -GCUCGUc---UAa---CGGUUCugCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 33928 0.73 0.351118
Target:  5'- uCGAuGUGGAccucuacgaUUGCCGcgAGGCGGCCGugCa -3'
miRNA:   3'- -GCU-CGUCU---------AACGGU--UCUGCCGGCugG- -5'
12353 3' -54.7 NC_003324.1 + 21168 0.73 0.36815
Target:  5'- cCGAcGCAGcacgcGCCGcGGCGGCCGACa -3'
miRNA:   3'- -GCU-CGUCuaa--CGGUuCUGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 16227 0.73 0.384847
Target:  5'- gGGGCAGGccgUGCCGAcGCGGCCagcgcagGGCCc -3'
miRNA:   3'- gCUCGUCUa--ACGGUUcUGCCGG-------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 15439 0.73 0.385739
Target:  5'- gGAGCAGuuugacgcgaagGUUGCCAGGGgcgaGGCCaaGGCCg -3'
miRNA:   3'- gCUCGUC------------UAACGGUUCUg---CCGG--CUGG- -5'
12353 3' -54.7 NC_003324.1 + 21262 0.72 0.39474
Target:  5'- uGAGCGGAUUGCCc-GACGcuGCCGcuuucaucucgGCCg -3'
miRNA:   3'- gCUCGUCUAACGGuuCUGC--CGGC-----------UGG- -5'
12353 3' -54.7 NC_003324.1 + 29238 0.72 0.412211
Target:  5'- gCGAGCAGGUcauUGCCAAGaagcuugGCGGCaCGuCUc -3'
miRNA:   3'- -GCUCGUCUA---ACGGUUC-------UGCCG-GCuGG- -5'
12353 3' -54.7 NC_003324.1 + 51236 0.72 0.441716
Target:  5'- aCGcGGCAGGUcaccUGCCugAAGACGGCUcACCu -3'
miRNA:   3'- -GC-UCGUCUA----ACGG--UUCUGCCGGcUGG- -5'
12353 3' -54.7 NC_003324.1 + 24384 0.71 0.461374
Target:  5'- aCGGGCug---GCCGAGAUGGUCGGgCa -3'
miRNA:   3'- -GCUCGucuaaCGGUUCUGCCGGCUgG- -5'
12353 3' -54.7 NC_003324.1 + 7850 0.71 0.471374
Target:  5'- --cGCAGAaUGgCGGGGCGGCaguGACCg -3'
miRNA:   3'- gcuCGUCUaACgGUUCUGCCGg--CUGG- -5'
12353 3' -54.7 NC_003324.1 + 44424 0.7 0.500973
Target:  5'- gCGGGCAccGGgcGCCGAGACuucggucgcugauGGCCGGCg -3'
miRNA:   3'- -GCUCGU--CUaaCGGUUCUG-------------CCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 52964 0.7 0.522909
Target:  5'- -aAGguGAcgcGCCGAGACGaGCgCGACCu -3'
miRNA:   3'- gcUCguCUaa-CGGUUCUGC-CG-GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 113 0.7 0.554854
Target:  5'- -aAGCAGAuUUGCC-AGACGGCguucagccgGACCa -3'
miRNA:   3'- gcUCGUCU-AACGGuUCUGCCGg--------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.