miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 26199 0.65 0.788975
Target:  5'- uCGAGauCAGGUaGCCgAAGGCccguucgGGCCGAUCc -3'
miRNA:   3'- -GCUC--GUCUAaCGG-UUCUG-------CCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 16805 0.68 0.63115
Target:  5'- cCGGGCAGAUUGCCcAGcGCuGCauCGACa -3'
miRNA:   3'- -GCUCGUCUAACGGuUC-UGcCG--GCUGg -5'
12353 3' -54.7 NC_003324.1 + 24138 0.69 0.609209
Target:  5'- gCGAGaAGGUaaagcccgccagUGCCGAGAaGGCCG-CCa -3'
miRNA:   3'- -GCUCgUCUA------------ACGGUUCUgCCGGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 24929 1.12 0.000797
Target:  5'- gCGAGCAGAUUGCCAAGACGGCCGACCu -3'
miRNA:   3'- -GCUCGUCUAACGGUUCUGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 31621 0.66 0.739239
Target:  5'- gCGGGCGcgcguGGcgGCCAuucucacgacgaGGACGGCgGACUg -3'
miRNA:   3'- -GCUCGU-----CUaaCGGU------------UCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 3154 0.66 0.739239
Target:  5'- aGAGCGGGagcGCCGu-GCGGCCauugagagaGACCg -3'
miRNA:   3'- gCUCGUCUaa-CGGUucUGCCGG---------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 26895 0.67 0.703132
Target:  5'- gGAGCGGcgccaaagccaGCCAAGcgcACGGCCGcgucuGCCa -3'
miRNA:   3'- gCUCGUCuaa--------CGGUUC---UGCCGGC-----UGG- -5'
12353 3' -54.7 NC_003324.1 + 43676 0.67 0.697744
Target:  5'- uCGAGCGcGAccGCCAAGuaucaggcccucaauCGGCUGACg -3'
miRNA:   3'- -GCUCGU-CUaaCGGUUCu--------------GCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 7470 0.67 0.685838
Target:  5'- uCGAGCAGGaaGCCGGGcaGCGuGCgGGCa -3'
miRNA:   3'- -GCUCGUCUaaCGGUUC--UGC-CGgCUGg -5'
12353 3' -54.7 NC_003324.1 + 12795 0.68 0.642126
Target:  5'- aCGAGCGca---CUAAGaACGGCUGACCa -3'
miRNA:   3'- -GCUCGUcuaacGGUUC-UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 30808 0.68 0.674959
Target:  5'- cCGAGCAGc------AGGCGGCCGACg -3'
miRNA:   3'- -GCUCGUCuaacgguUCUGCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 1766 0.67 0.685838
Target:  5'- gGAGauCAGcgUGCCAGGACGaaCCG-CCg -3'
miRNA:   3'- gCUC--GUCuaACGGUUCUGCc-GGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 29581 0.66 0.780094
Target:  5'- aGAGCAGAagccggUUaCCGAGAUGcGcCCGACg -3'
miRNA:   3'- gCUCGUCU------AAcGGUUCUGC-C-GGCUGg -5'
12353 3' -54.7 NC_003324.1 + 39834 0.68 0.674959
Target:  5'- uCGAGCAcg-UGCCGccGGACaccaaGGCCG-CCa -3'
miRNA:   3'- -GCUCGUcuaACGGU--UCUG-----CCGGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 13532 0.66 0.749642
Target:  5'- gCGAGCAGcuuAUUGaacuCCGcGGCGGCgGugCa -3'
miRNA:   3'- -GCUCGUC---UAAC----GGUuCUGCCGgCugG- -5'
12353 3' -54.7 NC_003324.1 + 600 0.67 0.685838
Target:  5'- -cGGUAGAUgGUCGAG-CuGCCGACCu -3'
miRNA:   3'- gcUCGUCUAaCGGUUCuGcCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 32215 0.68 0.653093
Target:  5'- gGGGCGGcccgGcCCGAGGCGGa-GACCa -3'
miRNA:   3'- gCUCGUCuaa-C-GGUUCUGCCggCUGG- -5'
12353 3' -54.7 NC_003324.1 + 48176 0.68 0.63115
Target:  5'- uCGAGCAGca-GCCAcGuCGGCgCGAUCc -3'
miRNA:   3'- -GCUCGUCuaaCGGUuCuGCCG-GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 57134 0.66 0.749642
Target:  5'- ---uCAGAagGCCAAGACGGCUuGCg -3'
miRNA:   3'- gcucGUCUaaCGGUUCUGCCGGcUGg -5'
12353 3' -54.7 NC_003324.1 + 31180 0.67 0.707429
Target:  5'- cCGAGCAGcagcgcAUUGCCGcaaGGAcCGGCacggacaaucaGGCCg -3'
miRNA:   3'- -GCUCGUC------UAACGGU---UCU-GCCGg----------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.