Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12353 | 3' | -54.7 | NC_003324.1 | + | 51236 | 0.72 | 0.441716 |
Target: 5'- aCGcGGCAGGUcaccUGCCugAAGACGGCUcACCu -3' miRNA: 3'- -GC-UCGUCUA----ACGG--UUCUGCCGGcUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 48176 | 0.68 | 0.63115 |
Target: 5'- uCGAGCAGca-GCCAcGuCGGCgCGAUCc -3' miRNA: 3'- -GCUCGUCuaaCGGUuCuGCCG-GCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 32215 | 0.68 | 0.653093 |
Target: 5'- gGGGCGGcccgGcCCGAGGCGGa-GACCa -3' miRNA: 3'- gCUCGUCuaa-C-GGUUCUGCCggCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 48464 | 0.75 | 0.287974 |
Target: 5'- cCGAGCAGGUaggcGCCAAGggcaacuGCGaGCCGGCUu -3' miRNA: 3'- -GCUCGUCUAa---CGGUUC-------UGC-CGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 18370 | 0.69 | 0.587347 |
Target: 5'- gGGGCAgcGAUUGCCc--GCGcGUCGGCCg -3' miRNA: 3'- gCUCGU--CUAACGGuucUGC-CGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 39834 | 0.68 | 0.674959 |
Target: 5'- uCGAGCAcg-UGCCGccGGACaccaaGGCCG-CCa -3' miRNA: 3'- -GCUCGUcuaACGGU--UCUG-----CCGGCuGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 57378 | 0.74 | 0.303443 |
Target: 5'- -cGGCGGAg-GCgAGGGCGGCaCGACCg -3' miRNA: 3'- gcUCGUCUaaCGgUUCUGCCG-GCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 30808 | 0.68 | 0.674959 |
Target: 5'- cCGAGCAGc------AGGCGGCCGACg -3' miRNA: 3'- -GCUCGUCuaacgguUCUGCCGGCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 35455 | 0.76 | 0.241521 |
Target: 5'- cCGAGCAGGcUGCagcAGcACaGGCCGACCa -3' miRNA: 3'- -GCUCGUCUaACGgu-UC-UG-CCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 22678 | 0.67 | 0.685838 |
Target: 5'- aCGcGGCAGGcaGCCAaaAGGCcGCCGAUCu -3' miRNA: 3'- -GC-UCGUCUaaCGGU--UCUGcCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 16805 | 0.68 | 0.63115 |
Target: 5'- cCGGGCAGAUUGCCcAGcGCuGCauCGACa -3' miRNA: 3'- -GCUCGUCUAACGGuUC-UGcCG--GCUGg -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 12795 | 0.68 | 0.642126 |
Target: 5'- aCGAGCGca---CUAAGaACGGCUGACCa -3' miRNA: 3'- -GCUCGUcuaacGGUUC-UGCCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 24556 | 0.68 | 0.642126 |
Target: 5'- aGAGCAG--UGCCGgaAGaucgucaccgcuGCGGgCGACCa -3' miRNA: 3'- gCUCGUCuaACGGU--UC------------UGCCgGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 32177 | 0.68 | 0.620174 |
Target: 5'- -cAGguGAUUGCCGAcGCGcGUCGugCg -3' miRNA: 3'- gcUCguCUAACGGUUcUGC-CGGCugG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 20787 | 0.68 | 0.620174 |
Target: 5'- --cGcCGGAacgUUGgCGAGGCGGCgGACCg -3' miRNA: 3'- gcuC-GUCU---AACgGUUCUGCCGgCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 7850 | 0.71 | 0.471374 |
Target: 5'- --cGCAGAaUGgCGGGGCGGCaguGACCg -3' miRNA: 3'- gcuCGUCUaACgGUUCUGCCGg--CUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 24828 | 0.66 | 0.759926 |
Target: 5'- -aGGCGGAUcgcGCCGAcaaGGUCGGCCg -3' miRNA: 3'- gcUCGUCUAa--CGGUUcugCCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 54048 | 0.66 | 0.759926 |
Target: 5'- gCGcGCAGAggcuuucGCUGcggcGGAauCGGCCGACCg -3' miRNA: 3'- -GCuCGUCUaa-----CGGU----UCU--GCCGGCUGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 18240 | 0.66 | 0.770081 |
Target: 5'- gCGGuCAGGUUGCCAucGACGacagaGCCGcgACCg -3' miRNA: 3'- -GCUcGUCUAACGGUu-CUGC-----CGGC--UGG- -5' |
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12353 | 3' | -54.7 | NC_003324.1 | + | 500 | 0.66 | 0.780094 |
Target: 5'- aGAGguGAUggcgaucaCCAAGGuCGGCagcuCGACCa -3' miRNA: 3'- gCUCguCUAac------GGUUCU-GCCG----GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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