miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 44673 0.66 0.629832
Target:  5'- uCUGCaACGGGCAGUuccucGCCGCCGugUCGc -3'
miRNA:   3'- -GAUGcUGUUCGUCG-----CGGCGGUggAGU- -5'
12354 5' -57 NC_003324.1 + 44918 0.66 0.590539
Target:  5'- -cACGGCA-GCAGCgggcacgccaaugacGCCGCCcCCUUc -3'
miRNA:   3'- gaUGCUGUuCGUCG---------------CGGCGGuGGAGu -5'
12354 5' -57 NC_003324.1 + 44923 0.67 0.55383
Target:  5'- -gAUGGCAAGCuGCGCgGCUAgaUCAa -3'
miRNA:   3'- gaUGCUGUUCGuCGCGgCGGUggAGU- -5'
12354 5' -57 NC_003324.1 + 45023 0.67 0.543155
Target:  5'- -aACGGCGAGguaacuuucCuGCGUCGCCACgUCGu -3'
miRNA:   3'- gaUGCUGUUC---------GuCGCGGCGGUGgAGU- -5'
12354 5' -57 NC_003324.1 + 45367 0.72 0.303447
Target:  5'- -gGCGGCGAGCAGCGagggcCCGUaCACCUgCAu -3'
miRNA:   3'- gaUGCUGUUCGUCGC-----GGCG-GUGGA-GU- -5'
12354 5' -57 NC_003324.1 + 45874 0.72 0.298239
Target:  5'- aUGCGAggccgugauguucauCGGGCacgcuccucauucGGCGCCGCCGCUUCGg -3'
miRNA:   3'- gAUGCU---------------GUUCG-------------UCGCGGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 45942 0.67 0.543155
Target:  5'- -cACGGCcucgcaucAGGCGccccGCGCCGuuuCCACCUCAc -3'
miRNA:   3'- gaUGCUG--------UUCGU----CGCGGC---GGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 47633 0.66 0.597068
Target:  5'- -gACGGCGAcCGG-GCCGCCAUCgUCGa -3'
miRNA:   3'- gaUGCUGUUcGUCgCGGCGGUGG-AGU- -5'
12354 5' -57 NC_003324.1 + 47842 0.7 0.385428
Target:  5'- uUAUGA--GGCGGCGCUGCCGCUg-- -3'
miRNA:   3'- gAUGCUguUCGUCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 47928 0.7 0.393489
Target:  5'- gUACGGuuuCAgcGGCAGCGCCGCCucauaagGCgUCAg -3'
miRNA:   3'- gAUGCU---GU--UCGUCGCGGCGG-------UGgAGU- -5'
12354 5' -57 NC_003324.1 + 50065 0.68 0.498116
Target:  5'- -gGCGAUcauugcccccaucaGGGCAGCGCCGaUCGCCa-- -3'
miRNA:   3'- gaUGCUG--------------UUCGUCGCGGC-GGUGGagu -5'
12354 5' -57 NC_003324.1 + 50363 0.68 0.490938
Target:  5'- uUACGACgGAGauaaaAGUGCCGUCGCCg-- -3'
miRNA:   3'- gAUGCUG-UUCg----UCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 53055 0.66 0.586194
Target:  5'- -gGCGGCAGGUcGCGCucgucucggcgCGUCACCUUu -3'
miRNA:   3'- gaUGCUGUUCGuCGCG-----------GCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 53610 0.66 0.607971
Target:  5'- aCU-CGACGAGCuGCGCgacgaacguCGCCGgCUCc -3'
miRNA:   3'- -GAuGCUGUUCGuCGCG---------GCGGUgGAGu -5'
12354 5' -57 NC_003324.1 + 53922 0.72 0.281616
Target:  5'- -cGCGGCAAGU-GCGCuuCGCCGCCUgCAg -3'
miRNA:   3'- gaUGCUGUUCGuCGCG--GCGGUGGA-GU- -5'
12354 5' -57 NC_003324.1 + 55133 0.68 0.460744
Target:  5'- uCUGCGcCGucgcGGCAGCccaGCCGuCCGCCUUg -3'
miRNA:   3'- -GAUGCuGU----UCGUCG---CGGC-GGUGGAGu -5'
12354 5' -57 NC_003324.1 + 55500 0.67 0.543155
Target:  5'- -cACGcCGGGCAGgaGCCuGCCgGCCUCGa -3'
miRNA:   3'- gaUGCuGUUCGUCg-CGG-CGG-UGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.