miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 25073 1.08 0.000723
Target:  5'- uCUACGACAAGCAGCGCCGCCACCUCAa -3'
miRNA:   3'- -GAUGCUGUUCGUCGCGGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 27935 0.75 0.176069
Target:  5'- -gAgGACgAAGCGcGCGCCGCCuACCUCGa -3'
miRNA:   3'- gaUgCUG-UUCGU-CGCGGCGG-UGGAGU- -5'
12354 5' -57 NC_003324.1 + 29035 0.66 0.629832
Target:  5'- -aACGAgcgcuugcuCAAGCAGCGCCaggcGgCACgCUCAa -3'
miRNA:   3'- gaUGCU---------GUUCGUCGCGG----CgGUG-GAGU- -5'
12354 5' -57 NC_003324.1 + 30466 0.66 0.60688
Target:  5'- -aACGuuGCGGGUcgaaucGGCGCCGCCGagcaggcCCUCGg -3'
miRNA:   3'- gaUGC--UGUUCG------UCGCGGCGGU-------GGAGU- -5'
12354 5' -57 NC_003324.1 + 30606 0.66 0.618896
Target:  5'- -aGCGGCAgcGGCAGCgaagGUCGCCACg--- -3'
miRNA:   3'- gaUGCUGU--UCGUCG----CGGCGGUGgagu -5'
12354 5' -57 NC_003324.1 + 31318 0.7 0.376599
Target:  5'- gUGCGGCcGGCGGCGCUGgCGCUggCGg -3'
miRNA:   3'- gAUGCUGuUCGUCGCGGCgGUGGa-GU- -5'
12354 5' -57 NC_003324.1 + 31842 0.67 0.575357
Target:  5'- --cCGGCAGGCguuGGCGCCcCCAgUUCAa -3'
miRNA:   3'- gauGCUGUUCG---UCGCGGcGGUgGAGU- -5'
12354 5' -57 NC_003324.1 + 32297 0.7 0.359357
Target:  5'- -gGCGACAAcggccucugcGCGGCGCCG-CAUCUCc -3'
miRNA:   3'- gaUGCUGUU----------CGUCGCGGCgGUGGAGu -5'
12354 5' -57 NC_003324.1 + 33047 0.67 0.543155
Target:  5'- -gACGGCGAGCAGaugcaGCgCGUgACCUUc -3'
miRNA:   3'- gaUGCUGUUCGUCg----CG-GCGgUGGAGu -5'
12354 5' -57 NC_003324.1 + 34395 0.68 0.480769
Target:  5'- -gACGACAAGC-GCGaaCGCUACCUg- -3'
miRNA:   3'- gaUGCUGUUCGuCGCg-GCGGUGGAgu -5'
12354 5' -57 NC_003324.1 + 34397 0.68 0.480769
Target:  5'- ---aGAUAGGCGaacuCGCCGCCGuCCUCGg -3'
miRNA:   3'- gaugCUGUUCGUc---GCGGCGGU-GGAGU- -5'
12354 5' -57 NC_003324.1 + 35117 0.69 0.431562
Target:  5'- -gACGAuCAGGCcgcuGCuGCCGCCGCCg-- -3'
miRNA:   3'- gaUGCU-GUUCGu---CG-CGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 36136 0.7 0.376599
Target:  5'- aUACGGCGuuGGUAGUGCgGCCAagguUCUCAu -3'
miRNA:   3'- gAUGCUGU--UCGUCGCGgCGGU----GGAGU- -5'
12354 5' -57 NC_003324.1 + 37487 0.66 0.618896
Target:  5'- -gGCGACuGGUAGCGCuucuugcgcaCGCUACCa-- -3'
miRNA:   3'- gaUGCUGuUCGUCGCG----------GCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 38434 0.75 0.195978
Target:  5'- -gACGGCGAcCAGCGCCGCCccggugcCCUCGu -3'
miRNA:   3'- gaUGCUGUUcGUCGCGGCGGu------GGAGU- -5'
12354 5' -57 NC_003324.1 + 40640 0.66 0.597068
Target:  5'- -gACGACAcGGUAGUGCCGaucgaaaaCCACCa-- -3'
miRNA:   3'- gaUGCUGU-UCGUCGCGGC--------GGUGGagu -5'
12354 5' -57 NC_003324.1 + 41409 0.67 0.55383
Target:  5'- uCUugGACAAGCGGCGggucuggGCCcagcCCUCGu -3'
miRNA:   3'- -GAugCUGUUCGUCGCgg-----CGGu---GGAGU- -5'
12354 5' -57 NC_003324.1 + 41554 0.69 0.422077
Target:  5'- -aACGAC-AGCGGCGCgGgCCuguuCCUCGc -3'
miRNA:   3'- gaUGCUGuUCGUCGCGgC-GGu---GGAGU- -5'
12354 5' -57 NC_003324.1 + 42288 0.66 0.607971
Target:  5'- --uCGGCAAcGCugaguGCGCCGCCugC-CAc -3'
miRNA:   3'- gauGCUGUU-CGu----CGCGGCGGugGaGU- -5'
12354 5' -57 NC_003324.1 + 43150 0.7 0.375724
Target:  5'- -gACGGCGAGCuuguugagcgAGCGCCaauccgaGCCAgCCUCGa -3'
miRNA:   3'- gaUGCUGUUCG----------UCGCGG-------CGGU-GGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.