miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 1457 0.71 0.350944
Target:  5'- -cGCGACGuauccGGCAGCGgauuuCCGCCAUCUUc -3'
miRNA:   3'- gaUGCUGU-----UCGUCGC-----GGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 32297 0.7 0.359357
Target:  5'- -gGCGACAAcggccucugcGCGGCGCCG-CAUCUCc -3'
miRNA:   3'- gaUGCUGUU----------CGUCGCGGCgGUGGAGu -5'
12354 5' -57 NC_003324.1 + 43150 0.7 0.375724
Target:  5'- -gACGGCGAGCuuguugagcgAGCGCCaauccgaGCCAgCCUCGa -3'
miRNA:   3'- gaUGCUGUUCG----------UCGCGG-------CGGU-GGAGU- -5'
12354 5' -57 NC_003324.1 + 36136 0.7 0.376599
Target:  5'- aUACGGCGuuGGUAGUGCgGCCAagguUCUCAu -3'
miRNA:   3'- gAUGCUGU--UCGUCGCGgCGGU----GGAGU- -5'
12354 5' -57 NC_003324.1 + 47842 0.7 0.385428
Target:  5'- uUAUGA--GGCGGCGCUGCCGCUg-- -3'
miRNA:   3'- gAUGCUguUCGUCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 41554 0.69 0.422077
Target:  5'- -aACGAC-AGCGGCGCgGgCCuguuCCUCGc -3'
miRNA:   3'- gaUGCUGuUCGUCGCGgC-GGu---GGAGU- -5'
12354 5' -57 NC_003324.1 + 40640 0.66 0.597068
Target:  5'- -gACGACAcGGUAGUGCCGaucgaaaaCCACCa-- -3'
miRNA:   3'- gaUGCUGU-UCGUCGCGGC--------GGUGGagu -5'
12354 5' -57 NC_003324.1 + 44918 0.66 0.590539
Target:  5'- -cACGGCA-GCAGCgggcacgccaaugacGCCGCCcCCUUc -3'
miRNA:   3'- gaUGCUGUuCGUCG---------------CGGCGGuGGAGu -5'
12354 5' -57 NC_003324.1 + 53055 0.66 0.586194
Target:  5'- -gGCGGCAGGUcGCGCucgucucggcgCGUCACCUUu -3'
miRNA:   3'- gaUGCUGUUCGuCGCG-----------GCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 31842 0.67 0.575357
Target:  5'- --cCGGCAGGCguuGGCGCCcCCAgUUCAa -3'
miRNA:   3'- gauGCUGUUCG---UCGCGGcGGUgGAGU- -5'
12354 5' -57 NC_003324.1 + 3925 0.67 0.564567
Target:  5'- -cAUGACGuGCGGCucaacgaaggaGCC-CCACCUCAu -3'
miRNA:   3'- gaUGCUGUuCGUCG-----------CGGcGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 24180 0.67 0.564567
Target:  5'- aCUACGACAAGgguauCAGCGCCaccguggcgcaGCgCACCg-- -3'
miRNA:   3'- -GAUGCUGUUC-----GUCGCGG-----------CG-GUGGagu -5'
12354 5' -57 NC_003324.1 + 15909 0.66 0.597068
Target:  5'- -gGCGAUAgucuucGGCAGCuCgGCCGCCUgAa -3'
miRNA:   3'- gaUGCUGU------UCGUCGcGgCGGUGGAgU- -5'
12354 5' -57 NC_003324.1 + 15223 0.66 0.607971
Target:  5'- -gGCGGCGAGCcuuuucacguGGCGCCGUgucgaCGCCg-- -3'
miRNA:   3'- gaUGCUGUUCG----------UCGCGGCG-----GUGGagu -5'
12354 5' -57 NC_003324.1 + 7361 0.66 0.607971
Target:  5'- uCUGCGugAuguAGCgAGCGaCCGUgAUCUCGg -3'
miRNA:   3'- -GAUGCugU---UCG-UCGC-GGCGgUGGAGU- -5'
12354 5' -57 NC_003324.1 + 16992 0.66 0.607971
Target:  5'- --gUGACGcuGGCA--GCCGCCACCUUg -3'
miRNA:   3'- gauGCUGU--UCGUcgCGGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 30606 0.66 0.618896
Target:  5'- -aGCGGCAgcGGCAGCgaagGUCGCCACg--- -3'
miRNA:   3'- gaUGCUGU--UCGUCG----CGGCGGUGgagu -5'
12354 5' -57 NC_003324.1 + 44673 0.66 0.629832
Target:  5'- uCUGCaACGGGCAGUuccucGCCGCCGugUCGc -3'
miRNA:   3'- -GAUGcUGUUCGUCG-----CGGCGGUggAGU- -5'
12354 5' -57 NC_003324.1 + 29035 0.66 0.629832
Target:  5'- -aACGAgcgcuugcuCAAGCAGCGCCaggcGgCACgCUCAa -3'
miRNA:   3'- gaUGCU---------GUUCGUCGCGG----CgGUG-GAGU- -5'
12354 5' -57 NC_003324.1 + 25073 1.08 0.000723
Target:  5'- uCUACGACAAGCAGCGCCGCCACCUCAa -3'
miRNA:   3'- -GAUGCUGUUCGUCGCGGCGGUGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.