Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12354 | 5' | -57 | NC_003324.1 | + | 1457 | 0.71 | 0.350944 |
Target: 5'- -cGCGACGuauccGGCAGCGgauuuCCGCCAUCUUc -3' miRNA: 3'- gaUGCUGU-----UCGUCGC-----GGCGGUGGAGu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 32297 | 0.7 | 0.359357 |
Target: 5'- -gGCGACAAcggccucugcGCGGCGCCG-CAUCUCc -3' miRNA: 3'- gaUGCUGUU----------CGUCGCGGCgGUGGAGu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 43150 | 0.7 | 0.375724 |
Target: 5'- -gACGGCGAGCuuguugagcgAGCGCCaauccgaGCCAgCCUCGa -3' miRNA: 3'- gaUGCUGUUCG----------UCGCGG-------CGGU-GGAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 36136 | 0.7 | 0.376599 |
Target: 5'- aUACGGCGuuGGUAGUGCgGCCAagguUCUCAu -3' miRNA: 3'- gAUGCUGU--UCGUCGCGgCGGU----GGAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 47842 | 0.7 | 0.385428 |
Target: 5'- uUAUGA--GGCGGCGCUGCCGCUg-- -3' miRNA: 3'- gAUGCUguUCGUCGCGGCGGUGGagu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 41554 | 0.69 | 0.422077 |
Target: 5'- -aACGAC-AGCGGCGCgGgCCuguuCCUCGc -3' miRNA: 3'- gaUGCUGuUCGUCGCGgC-GGu---GGAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 19712 | 0.67 | 0.543155 |
Target: 5'- -cGCGGCAAacugacugaccuGCAGC-CCGCgCugCUCAa -3' miRNA: 3'- gaUGCUGUU------------CGUCGcGGCG-GugGAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 33047 | 0.67 | 0.543155 |
Target: 5'- -gACGGCGAGCAGaugcaGCgCGUgACCUUc -3' miRNA: 3'- gaUGCUGUUCGUCg----CG-GCGgUGGAGu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 50065 | 0.68 | 0.498116 |
Target: 5'- -gGCGAUcauugcccccaucaGGGCAGCGCCGaUCGCCa-- -3' miRNA: 3'- gaUGCUG--------------UUCGUCGCGGC-GGUGGagu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 34395 | 0.68 | 0.480769 |
Target: 5'- -gACGACAAGC-GCGaaCGCUACCUg- -3' miRNA: 3'- gaUGCUGUUCGuCGCg-GCGGUGGAgu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 20894 | 0.68 | 0.469701 |
Target: 5'- -aACGGCGAuGC-GCGucaccaacacgguCCGCCGCCUCGc -3' miRNA: 3'- gaUGCUGUU-CGuCGC-------------GGCGGUGGAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 55133 | 0.68 | 0.460744 |
Target: 5'- uCUGCGcCGucgcGGCAGCccaGCCGuCCGCCUUg -3' miRNA: 3'- -GAUGCuGU----UCGUCG---CGGC-GGUGGAGu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 35117 | 0.69 | 0.431562 |
Target: 5'- -gACGAuCAGGCcgcuGCuGCCGCCGCCg-- -3' miRNA: 3'- gaUGCU-GUUCGu---CG-CGGCGGUGGagu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 16643 | 0.7 | 0.394391 |
Target: 5'- aCUACGGCGAGacgaugAGCaGCCaGCC-CCUCAc -3' miRNA: 3'- -GAUGCUGUUCg-----UCG-CGG-CGGuGGAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 47928 | 0.7 | 0.393489 |
Target: 5'- gUACGGuuuCAgcGGCAGCGCCGCCucauaagGCgUCAg -3' miRNA: 3'- gAUGCU---GU--UCGUCGCGGCGG-------UGgAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 31318 | 0.7 | 0.376599 |
Target: 5'- gUGCGGCcGGCGGCGCUGgCGCUggCGg -3' miRNA: 3'- gAUGCUGuUCGUCGCGGCgGUGGa-GU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 5548 | 0.71 | 0.350944 |
Target: 5'- -aGCGugGGGCgGGCGaCGCCGCCUg- -3' miRNA: 3'- gaUGCugUUCG-UCGCgGCGGUGGAgu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 22677 | 0.72 | 0.274621 |
Target: 5'- -cGCGGCAGGCAGCcaaaagGCCGCCgAUCUg- -3' miRNA: 3'- gaUGCUGUUCGUCG------CGGCGG-UGGAgu -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 38434 | 0.75 | 0.195978 |
Target: 5'- -gACGGCGAcCAGCGCCGCCccggugcCCUCGu -3' miRNA: 3'- gaUGCUGUUcGUCGCGGCGGu------GGAGU- -5' |
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12354 | 5' | -57 | NC_003324.1 | + | 27935 | 0.75 | 0.176069 |
Target: 5'- -gAgGACgAAGCGcGCGCCGCCuACCUCGa -3' miRNA: 3'- gaUgCUG-UUCGU-CGCGGCGG-UGGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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