miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 18626 0.66 0.597068
Target:  5'- gUGCGACGAgaacacccGCAGCGC-GUCGCCa-- -3'
miRNA:   3'- gAUGCUGUU--------CGUCGCGgCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 6184 0.69 0.431562
Target:  5'- aUGCGAgAGGCAGCccuuGCUGCgACCgUCGa -3'
miRNA:   3'- gAUGCUgUUCGUCG----CGGCGgUGG-AGU- -5'
12354 5' -57 NC_003324.1 + 34397 0.68 0.480769
Target:  5'- ---aGAUAGGCGaacuCGCCGCCGuCCUCGg -3'
miRNA:   3'- gaugCUGUUCGUc---GCGGCGGU-GGAGU- -5'
12354 5' -57 NC_003324.1 + 20580 0.68 0.484824
Target:  5'- --cUGGCGAGCgggauccggugcuguGGCGCCGUCGCCa-- -3'
miRNA:   3'- gauGCUGUUCG---------------UCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 50363 0.68 0.490938
Target:  5'- uUACGACgGAGauaaaAGUGCCGUCGCCg-- -3'
miRNA:   3'- gAUGCUG-UUCg----UCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 55500 0.67 0.543155
Target:  5'- -cACGcCGGGCAGgaGCCuGCCgGCCUCGa -3'
miRNA:   3'- gaUGCuGUUCGUCg-CGG-CGG-UGGAGU- -5'
12354 5' -57 NC_003324.1 + 45023 0.67 0.543155
Target:  5'- -aACGGCGAGguaacuuucCuGCGUCGCCACgUCGu -3'
miRNA:   3'- gaUGCUGUUC---------GuCGCGGCGGUGgAGU- -5'
12354 5' -57 NC_003324.1 + 41409 0.67 0.55383
Target:  5'- uCUugGACAAGCGGCGggucuggGCCcagcCCUCGu -3'
miRNA:   3'- -GAugCUGUUCGUCGCgg-----CGGu---GGAGU- -5'
12354 5' -57 NC_003324.1 + 44923 0.67 0.55383
Target:  5'- -gAUGGCAAGCuGCGCgGCUAgaUCAa -3'
miRNA:   3'- gaUGCUGUUCGuCGCGgCGGUggAGU- -5'
12354 5' -57 NC_003324.1 + 41554 0.69 0.422077
Target:  5'- -aACGAC-AGCGGCGCgGgCCuguuCCUCGc -3'
miRNA:   3'- gaUGCUGuUCGUCGCGgC-GGu---GGAGU- -5'
12354 5' -57 NC_003324.1 + 47842 0.7 0.385428
Target:  5'- uUAUGA--GGCGGCGCUGCCGCUg-- -3'
miRNA:   3'- gAUGCUguUCGUCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 36136 0.7 0.376599
Target:  5'- aUACGGCGuuGGUAGUGCgGCCAagguUCUCAu -3'
miRNA:   3'- gAUGCUGU--UCGUCGCGgCGGU----GGAGU- -5'
12354 5' -57 NC_003324.1 + 5465 0.73 0.235552
Target:  5'- ---aGGCAGGCGGCGUCGCCcGCCcCAc -3'
miRNA:   3'- gaugCUGUUCGUCGCGGCGG-UGGaGU- -5'
12354 5' -57 NC_003324.1 + 53922 0.72 0.281616
Target:  5'- -cGCGGCAAGU-GCGCuuCGCCGCCUgCAg -3'
miRNA:   3'- gaUGCUGUUCGuCGCG--GCGGUGGA-GU- -5'
12354 5' -57 NC_003324.1 + 45874 0.72 0.298239
Target:  5'- aUGCGAggccgugauguucauCGGGCacgcuccucauucGGCGCCGCCGCUUCGg -3'
miRNA:   3'- gAUGCU---------------GUUCG-------------UCGCGGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 45367 0.72 0.303447
Target:  5'- -gGCGGCGAGCAGCGagggcCCGUaCACCUgCAu -3'
miRNA:   3'- gaUGCUGUUCGUCGC-----GGCG-GUGGA-GU- -5'
12354 5' -57 NC_003324.1 + 13065 0.71 0.350111
Target:  5'- -gACGAUuuGCAGCcgguaccGCCGCCGCCg-- -3'
miRNA:   3'- gaUGCUGuuCGUCG-------CGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 1457 0.71 0.350944
Target:  5'- -cGCGACGuauccGGCAGCGgauuuCCGCCAUCUUc -3'
miRNA:   3'- gaUGCUGU-----UCGUCGC-----GGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 32297 0.7 0.359357
Target:  5'- -gGCGACAAcggccucugcGCGGCGCCG-CAUCUCc -3'
miRNA:   3'- gaUGCUGUU----------CGUCGCGGCgGUGGAGu -5'
12354 5' -57 NC_003324.1 + 43150 0.7 0.375724
Target:  5'- -gACGGCGAGCuuguugagcgAGCGCCaauccgaGCCAgCCUCGa -3'
miRNA:   3'- gaUGCUGUUCG----------UCGCGG-------CGGU-GGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.