miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 25073 1.08 0.000723
Target:  5'- uCUACGACAAGCAGCGCCGCCACCUCAa -3'
miRNA:   3'- -GAUGCUGUUCGUCGCGGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 18042 0.8 0.090511
Target:  5'- aUGCGAUAGGCGGCgaguGCCGUCACUUCGc -3'
miRNA:   3'- gAUGCUGUUCGUCG----CGGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 27935 0.75 0.176069
Target:  5'- -gAgGACgAAGCGcGCGCCGCCuACCUCGa -3'
miRNA:   3'- gaUgCUG-UUCGU-CGCGGCGG-UGGAGU- -5'
12354 5' -57 NC_003324.1 + 38434 0.75 0.195978
Target:  5'- -gACGGCGAcCAGCGCCGCCccggugcCCUCGu -3'
miRNA:   3'- gaUGCUGUUcGUCGCGGCGGu------GGAGU- -5'
12354 5' -57 NC_003324.1 + 5465 0.73 0.235552
Target:  5'- ---aGGCAGGCGGCGUCGCCcGCCcCAc -3'
miRNA:   3'- gaugCUGUUCGUCGCGGCGG-UGGaGU- -5'
12354 5' -57 NC_003324.1 + 22677 0.72 0.274621
Target:  5'- -cGCGGCAGGCAGCcaaaagGCCGCCgAUCUg- -3'
miRNA:   3'- gaUGCUGUUCGUCG------CGGCGG-UGGAgu -5'
12354 5' -57 NC_003324.1 + 53922 0.72 0.281616
Target:  5'- -cGCGGCAAGU-GCGCuuCGCCGCCUgCAg -3'
miRNA:   3'- gaUGCUGUUCGuCGCG--GCGGUGGA-GU- -5'
12354 5' -57 NC_003324.1 + 45874 0.72 0.298239
Target:  5'- aUGCGAggccgugauguucauCGGGCacgcuccucauucGGCGCCGCCGCUUCGg -3'
miRNA:   3'- gAUGCU---------------GUUCG-------------UCGCGGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 45367 0.72 0.303447
Target:  5'- -gGCGGCGAGCAGCGagggcCCGUaCACCUgCAu -3'
miRNA:   3'- gaUGCUGUUCGUCGC-----GGCG-GUGGA-GU- -5'
12354 5' -57 NC_003324.1 + 13065 0.71 0.350111
Target:  5'- -gACGAUuuGCAGCcgguaccGCCGCCGCCg-- -3'
miRNA:   3'- gaUGCUGuuCGUCG-------CGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 1457 0.71 0.350944
Target:  5'- -cGCGACGuauccGGCAGCGgauuuCCGCCAUCUUc -3'
miRNA:   3'- gaUGCUGU-----UCGUCGC-----GGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 5548 0.71 0.350944
Target:  5'- -aGCGugGGGCgGGCGaCGCCGCCUg- -3'
miRNA:   3'- gaUGCugUUCG-UCGCgGCGGUGGAgu -5'
12354 5' -57 NC_003324.1 + 32297 0.7 0.359357
Target:  5'- -gGCGACAAcggccucugcGCGGCGCCG-CAUCUCc -3'
miRNA:   3'- gaUGCUGUU----------CGUCGCGGCgGUGGAGu -5'
12354 5' -57 NC_003324.1 + 43150 0.7 0.375724
Target:  5'- -gACGGCGAGCuuguugagcgAGCGCCaauccgaGCCAgCCUCGa -3'
miRNA:   3'- gaUGCUGUUCG----------UCGCGG-------CGGU-GGAGU- -5'
12354 5' -57 NC_003324.1 + 31318 0.7 0.376599
Target:  5'- gUGCGGCcGGCGGCGCUGgCGCUggCGg -3'
miRNA:   3'- gAUGCUGuUCGUCGCGGCgGUGGa-GU- -5'
12354 5' -57 NC_003324.1 + 36136 0.7 0.376599
Target:  5'- aUACGGCGuuGGUAGUGCgGCCAagguUCUCAu -3'
miRNA:   3'- gAUGCUGU--UCGUCGCGgCGGU----GGAGU- -5'
12354 5' -57 NC_003324.1 + 47842 0.7 0.385428
Target:  5'- uUAUGA--GGCGGCGCUGCCGCUg-- -3'
miRNA:   3'- gAUGCUguUCGUCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 47928 0.7 0.393489
Target:  5'- gUACGGuuuCAgcGGCAGCGCCGCCucauaagGCgUCAg -3'
miRNA:   3'- gAUGCU---GU--UCGUCGCGGCGG-------UGgAGU- -5'
12354 5' -57 NC_003324.1 + 16643 0.7 0.394391
Target:  5'- aCUACGGCGAGacgaugAGCaGCCaGCC-CCUCAc -3'
miRNA:   3'- -GAUGCUGUUCg-----UCG-CGG-CGGuGGAGU- -5'
12354 5' -57 NC_003324.1 + 41554 0.69 0.422077
Target:  5'- -aACGAC-AGCGGCGCgGgCCuguuCCUCGc -3'
miRNA:   3'- gaUGCUGuUCGUCGCGgC-GGu---GGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.