miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12354 5' -57 NC_003324.1 + 1457 0.71 0.350944
Target:  5'- -cGCGACGuauccGGCAGCGgauuuCCGCCAUCUUc -3'
miRNA:   3'- gaUGCUGU-----UCGUCGC-----GGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 3925 0.67 0.564567
Target:  5'- -cAUGACGuGCGGCucaacgaaggaGCC-CCACCUCAu -3'
miRNA:   3'- gaUGCUGUuCGUCG-----------CGGcGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 5465 0.73 0.235552
Target:  5'- ---aGGCAGGCGGCGUCGCCcGCCcCAc -3'
miRNA:   3'- gaugCUGUUCGUCGCGGCGG-UGGaGU- -5'
12354 5' -57 NC_003324.1 + 5548 0.71 0.350944
Target:  5'- -aGCGugGGGCgGGCGaCGCCGCCUg- -3'
miRNA:   3'- gaUGCugUUCG-UCGCgGCGGUGGAgu -5'
12354 5' -57 NC_003324.1 + 6184 0.69 0.431562
Target:  5'- aUGCGAgAGGCAGCccuuGCUGCgACCgUCGa -3'
miRNA:   3'- gAUGCUgUUCGUCG----CGGCGgUGG-AGU- -5'
12354 5' -57 NC_003324.1 + 7361 0.66 0.607971
Target:  5'- uCUGCGugAuguAGCgAGCGaCCGUgAUCUCGg -3'
miRNA:   3'- -GAUGCugU---UCG-UCGC-GGCGgUGGAGU- -5'
12354 5' -57 NC_003324.1 + 13065 0.71 0.350111
Target:  5'- -gACGAUuuGCAGCcgguaccGCCGCCGCCg-- -3'
miRNA:   3'- gaUGCUGuuCGUCG-------CGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 13512 0.66 0.629832
Target:  5'- -cGCGGC-GGCGGUGCacuggaCACCUCAg -3'
miRNA:   3'- gaUGCUGuUCGUCGCGgcg---GUGGAGU- -5'
12354 5' -57 NC_003324.1 + 15223 0.66 0.607971
Target:  5'- -gGCGGCGAGCcuuuucacguGGCGCCGUgucgaCGCCg-- -3'
miRNA:   3'- gaUGCUGUUCG----------UCGCGGCG-----GUGGagu -5'
12354 5' -57 NC_003324.1 + 15909 0.66 0.597068
Target:  5'- -gGCGAUAgucuucGGCAGCuCgGCCGCCUgAa -3'
miRNA:   3'- gaUGCUGU------UCGUCGcGgCGGUGGAgU- -5'
12354 5' -57 NC_003324.1 + 16643 0.7 0.394391
Target:  5'- aCUACGGCGAGacgaugAGCaGCCaGCC-CCUCAc -3'
miRNA:   3'- -GAUGCUGUUCg-----UCG-CGG-CGGuGGAGU- -5'
12354 5' -57 NC_003324.1 + 16992 0.66 0.607971
Target:  5'- --gUGACGcuGGCA--GCCGCCACCUUg -3'
miRNA:   3'- gauGCUGU--UCGUcgCGGCGGUGGAGu -5'
12354 5' -57 NC_003324.1 + 18042 0.8 0.090511
Target:  5'- aUGCGAUAGGCGGCgaguGCCGUCACUUCGc -3'
miRNA:   3'- gAUGCUGUUCGUCG----CGGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 18626 0.66 0.597068
Target:  5'- gUGCGACGAgaacacccGCAGCGC-GUCGCCa-- -3'
miRNA:   3'- gAUGCUGUU--------CGUCGCGgCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 19712 0.67 0.543155
Target:  5'- -cGCGGCAAacugacugaccuGCAGC-CCGCgCugCUCAa -3'
miRNA:   3'- gaUGCUGUU------------CGUCGcGGCG-GugGAGU- -5'
12354 5' -57 NC_003324.1 + 20580 0.68 0.484824
Target:  5'- --cUGGCGAGCgggauccggugcuguGGCGCCGUCGCCa-- -3'
miRNA:   3'- gauGCUGUUCG---------------UCGCGGCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 20894 0.68 0.469701
Target:  5'- -aACGGCGAuGC-GCGucaccaacacgguCCGCCGCCUCGc -3'
miRNA:   3'- gaUGCUGUU-CGuCGC-------------GGCGGUGGAGU- -5'
12354 5' -57 NC_003324.1 + 21105 0.67 0.55383
Target:  5'- cCUuCGACAAGCccaaggauuucGGCGCgGCCAUCa-- -3'
miRNA:   3'- -GAuGCUGUUCG-----------UCGCGgCGGUGGagu -5'
12354 5' -57 NC_003324.1 + 22677 0.72 0.274621
Target:  5'- -cGCGGCAGGCAGCcaaaagGCCGCCgAUCUg- -3'
miRNA:   3'- gaUGCUGUUCGUCG------CGGCGG-UGGAgu -5'
12354 5' -57 NC_003324.1 + 24180 0.67 0.564567
Target:  5'- aCUACGACAAGgguauCAGCGCCaccguggcgcaGCgCACCg-- -3'
miRNA:   3'- -GAUGCUGUUC-----GUCGCGG-----------CG-GUGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.