miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 28628 0.68 0.771783
Target:  5'- gGcCCGGAUCGUugcgggCCGCCuugu-CGCGCg -3'
miRNA:   3'- aC-GGCUUAGCA------GGUGGucuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 29083 0.77 0.285592
Target:  5'- cGCCGAAcUCGUCaGCCAGAcgcuUGCGCu -3'
miRNA:   3'- aCGGCUU-AGCAGgUGGUCUuu--GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 29994 0.74 0.439672
Target:  5'- gGCCGcgcCGUCCagcaugGCCAGcAGCGCGCc -3'
miRNA:   3'- aCGGCuuaGCAGG------UGGUCuUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 30475 0.75 0.383206
Target:  5'- gGUCGAAUCGgcgCCGCCgagcaggcccucGGAAACuGCGCc -3'
miRNA:   3'- aCGGCUUAGCa--GGUGG------------UCUUUG-CGCG- -5'
12355 5' -52.8 NC_003324.1 + 31077 0.67 0.811225
Target:  5'- gGCCuGAUUGUCCguGCCGGuccuugcggcAAUGCGCu -3'
miRNA:   3'- aCGGcUUAGCAGG--UGGUCu---------UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 31344 0.72 0.543192
Target:  5'- aGCCG--UCG-CCGCCGcaaAAACGCGCa -3'
miRNA:   3'- aCGGCuuAGCaGGUGGUc--UUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 31526 0.67 0.829841
Target:  5'- cGCCGuccucGUCGUgagaauggCCGCCAc--GCGCGCc -3'
miRNA:   3'- aCGGCu----UAGCA--------GGUGGUcuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 31704 0.69 0.708454
Target:  5'- gUGCUGGugacgCGaaCCACCAGGAGCGC-Cg -3'
miRNA:   3'- -ACGGCUua---GCa-GGUGGUCUUUGCGcG- -5'
12355 5' -52.8 NC_003324.1 + 32343 0.67 0.810273
Target:  5'- cUGgCGAG-CGUCCcgacacgACCGGggGCGCu- -3'
miRNA:   3'- -ACgGCUUaGCAGG-------UGGUCuuUGCGcg -5'
12355 5' -52.8 NC_003324.1 + 32833 0.66 0.864457
Target:  5'- aGCCGccUCGaucaUCGCCAcuGACGCGCc -3'
miRNA:   3'- aCGGCuuAGCa---GGUGGUcuUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 34438 0.66 0.870123
Target:  5'- gGCCGAcggcacauuggcaagCGUCgGCgGGAuuuCGCGCu -3'
miRNA:   3'- aCGGCUua-------------GCAGgUGgUCUuu-GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 34701 0.66 0.856153
Target:  5'- cGCCGAGgugCGcaaaCugCAGA-GCGCGUc -3'
miRNA:   3'- aCGGCUUa--GCag--GugGUCUuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 35504 0.67 0.811225
Target:  5'- aGCCGggUuCGUCUcccgcaccgaggGCgAGGAaaccAUGCGCg -3'
miRNA:   3'- aCGGCuuA-GCAGG------------UGgUCUU----UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 35608 0.68 0.771783
Target:  5'- uUGCCGA--UGUCgGCUucuGcuGCGCGCa -3'
miRNA:   3'- -ACGGCUuaGCAGgUGGu--CuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 36652 0.69 0.686608
Target:  5'- cGgCGAAggugCCGCCGGAGAUGCGa -3'
miRNA:   3'- aCgGCUUagcaGGUGGUCUUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 36964 0.7 0.619036
Target:  5'- cGCCGugcUGUCCcaaagcauguugcGCCAGGAcucguaGCGCGCa -3'
miRNA:   3'- aCGGCuuaGCAGG-------------UGGUCUU------UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38001 0.66 0.872514
Target:  5'- aUGCCGGAgCGguugCgGCgCAcGggGCGCGUc -3'
miRNA:   3'- -ACGGCUUaGCa---GgUG-GU-CuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38119 0.66 0.872514
Target:  5'- cGCCGucucguGUCGgUCGgCGGAauguuGACGCGCc -3'
miRNA:   3'- aCGGCu-----UAGCaGGUgGUCU-----UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38162 0.8 0.187317
Target:  5'- cGCCGAcgCGcUUCGCCAGAAG-GCGCa -3'
miRNA:   3'- aCGGCUuaGC-AGGUGGUCUUUgCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38256 0.7 0.631256
Target:  5'- aUGCCG-AUCG-CCAUCAGGucgggagUGCGCg -3'
miRNA:   3'- -ACGGCuUAGCaGGUGGUCUuu-----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.