miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 19864 0.66 0.864457
Target:  5'- cUGUCGu-UCGUCCagaaaaugccGCCGGggGaCGCGa -3'
miRNA:   3'- -ACGGCuuAGCAGG----------UGGUCuuU-GCGCg -5'
12355 5' -52.8 NC_003324.1 + 20915 0.67 0.829841
Target:  5'- gGCCGAcaUGgacCCgACCGGAacggcGAUGCGCg -3'
miRNA:   3'- aCGGCUuaGCa--GG-UGGUCU-----UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 20997 0.67 0.791843
Target:  5'- cGUCGGAUCG-CCGCaauGAuggcCGCGCc -3'
miRNA:   3'- aCGGCUUAGCaGGUGgu-CUuu--GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21076 0.7 0.631256
Target:  5'- cUGCCuuGUCGgCCGCCGcGgcGCGUGCu -3'
miRNA:   3'- -ACGGcuUAGCaGGUGGU-CuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21356 0.7 0.629034
Target:  5'- gGCCGAgaugaaagcggcagcGUCGggcaaUCCGCUcauccuggaagagauGGAAACGCGCc -3'
miRNA:   3'- aCGGCU---------------UAGC-----AGGUGG---------------UCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21383 0.71 0.586919
Target:  5'- aGCCucGAUCGUCUGCCAcGucCGCGCa -3'
miRNA:   3'- aCGGc-UUAGCAGGUGGUcUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21823 0.72 0.543192
Target:  5'- cGCCG--UCGUCCGCCuucugcaucAGuu-CGCGCa -3'
miRNA:   3'- aCGGCuuAGCAGGUGG---------UCuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 22142 0.72 0.532418
Target:  5'- uUGCCGucGUCGUCCGCCucgccGACGC-Cg -3'
miRNA:   3'- -ACGGCu-UAGCAGGUGGucu--UUGCGcG- -5'
12355 5' -52.8 NC_003324.1 + 22563 0.66 0.847609
Target:  5'- gGCCGAAaUGUUCA-CGGucAUGCGCu -3'
miRNA:   3'- aCGGCUUaGCAGGUgGUCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 23034 0.7 0.631256
Target:  5'- cGCuCGcAUCG-CCACCGGAgacuggGACGCGg -3'
miRNA:   3'- aCG-GCuUAGCaGGUGGUCU------UUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 23469 0.66 0.838836
Target:  5'- aGCCGAGcgCGUCaaagCGGAGugGCGa -3'
miRNA:   3'- aCGGCUUa-GCAGgug-GUCUUugCGCg -5'
12355 5' -52.8 NC_003324.1 + 23843 0.68 0.751135
Target:  5'- cGCCGAAUCGgaccCCGauuuCCGGcgcAACGuCGCa -3'
miRNA:   3'- aCGGCUUAGCa---GGU----GGUCu--UUGC-GCG- -5'
12355 5' -52.8 NC_003324.1 + 24562 0.66 0.872514
Target:  5'- gUGCCGGAagaUCGU-CACCGcu-GCGgGCg -3'
miRNA:   3'- -ACGGCUU---AGCAgGUGGUcuuUGCgCG- -5'
12355 5' -52.8 NC_003324.1 + 24715 0.67 0.820634
Target:  5'- cGCCGAccuUCGUCCAU----GACGUGUc -3'
miRNA:   3'- aCGGCUu--AGCAGGUGgucuUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 25113 0.67 0.795777
Target:  5'- cGCCGGGguagagguucuuggCGaugCCGCCGGuGACGCGa -3'
miRNA:   3'- aCGGCUUa-------------GCa--GGUGGUCuUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 25400 1.13 0.001082
Target:  5'- cUGCCGAAUCGUCCACCAGAAACGCGCa -3'
miRNA:   3'- -ACGGCUUAGCAGGUGGUCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 25829 0.66 0.847609
Target:  5'- cGcCCGGuuUCGUCCucaaGCUGGAugcGGCGCGUg -3'
miRNA:   3'- aC-GGCUu-AGCAGG----UGGUCU---UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 25941 0.66 0.856153
Target:  5'- gGUCGAucgcgAUCGcUCCACC----ACGCGCc -3'
miRNA:   3'- aCGGCU-----UAGC-AGGUGGucuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 26261 0.73 0.479841
Target:  5'- cGCC---UCGUCCGCCuGAAACcCGCu -3'
miRNA:   3'- aCGGcuuAGCAGGUGGuCUUUGcGCG- -5'
12355 5' -52.8 NC_003324.1 + 27951 0.66 0.864457
Target:  5'- gGCCGGcuaCG-CCAgCGaggacGAAGCGCGCg -3'
miRNA:   3'- aCGGCUua-GCaGGUgGU-----CUUUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.