miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 137 0.67 0.777867
Target:  5'- aGCCGGAccagcuucaaguguUCGggauaggggauauUCCugUAGAcGGCGCGCg -3'
miRNA:   3'- aCGGCUU--------------AGC-------------AGGugGUCU-UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 1529 0.68 0.762558
Target:  5'- cGCCGGAUaCGUCgCGCCGuuuccuuugcguCGCGCu -3'
miRNA:   3'- aCGGCUUA-GCAG-GUGGUcuuu--------GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 2755 0.66 0.872514
Target:  5'- uUGCCGAAgCGgCCACCgcgcuGGAAGgGCa- -3'
miRNA:   3'- -ACGGCUUaGCaGGUGG-----UCUUUgCGcg -5'
12355 5' -52.8 NC_003324.1 + 3237 0.71 0.564945
Target:  5'- gUGCCGGugcuuUCGgagCuCGCCaAGggGCGCGUc -3'
miRNA:   3'- -ACGGCUu----AGCa--G-GUGG-UCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 6135 0.73 0.447555
Target:  5'- cGCCGAuagCGgacugacccgcgCCGCCuGGAAUGCGCu -3'
miRNA:   3'- aCGGCUua-GCa-----------GGUGGuCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 6216 0.66 0.838836
Target:  5'- gGCgCGggUCaGUCCGCUAucGGCguagGCGCg -3'
miRNA:   3'- aCG-GCuuAG-CAGGUGGUcuUUG----CGCG- -5'
12355 5' -52.8 NC_003324.1 + 8120 0.69 0.675599
Target:  5'- gUGCUGAAacUCacCCGCCGGGcagcuGCGCGCu -3'
miRNA:   3'- -ACGGCUU--AGcaGGUGGUCUu----UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 8855 0.66 0.862815
Target:  5'- gGCCGucgggagcauuUCGguagCCGCgGGAGAUGCGg -3'
miRNA:   3'- aCGGCuu---------AGCa---GGUGgUCUUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 9471 0.69 0.697563
Target:  5'- aUGCUGGAUCGgcccgCUACCugaAGAAugGUGg -3'
miRNA:   3'- -ACGGCUUAGCa----GGUGG---UCUUugCGCg -5'
12355 5' -52.8 NC_003324.1 + 10314 0.67 0.780888
Target:  5'- cGCCGcGUgCaUCCGCUccuagaaacaguaGGggGCGCGCu -3'
miRNA:   3'- aCGGCuUA-GcAGGUGG-------------UCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 11443 0.67 0.811225
Target:  5'- aUGUCaGAugGUC-UCCACUGGAA-CGCGCa -3'
miRNA:   3'- -ACGG-CU--UAGcAGGUGGUCUUuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 12603 0.66 0.872514
Target:  5'- cGUCGccUCGaacugCCACCAGcccgucguuGGACGCGUa -3'
miRNA:   3'- aCGGCuuAGCa----GGUGGUC---------UUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 13699 0.7 0.639034
Target:  5'- aUGCCGAucgccugcgCGUCUucgcggaauuugcaGCCGGGAAUGCGg -3'
miRNA:   3'- -ACGGCUua-------GCAGG--------------UGGUCUUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 15201 0.66 0.853614
Target:  5'- cGCCGuGUCGa-CGCCgAGAccgauggcauccauGACGCGCu -3'
miRNA:   3'- aCGGCuUAGCagGUGG-UCU--------------UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 15978 0.7 0.653468
Target:  5'- uUGCCGcuUCGUCgCGuCCuGAGAUGCaGCg -3'
miRNA:   3'- -ACGGCuuAGCAG-GU-GGuCUUUGCG-CG- -5'
12355 5' -52.8 NC_003324.1 + 16935 0.68 0.74062
Target:  5'- -aCCGAuagAUCGguUCCGCCAGcAGAuCGCGUg -3'
miRNA:   3'- acGGCU---UAGC--AGGUGGUC-UUU-GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 17223 0.72 0.543192
Target:  5'- cGCCGAGU--UCCGCUcauaggucuccgAGAuACGCGCa -3'
miRNA:   3'- aCGGCUUAgcAGGUGG------------UCUuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 17271 0.72 0.511109
Target:  5'- cGCCGAAagccgCGUCCGaCAGA--CGCGCc -3'
miRNA:   3'- aCGGCUUa----GCAGGUgGUCUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 18889 0.67 0.781892
Target:  5'- cGCCGAccuUCGcCgCGCCAuGGAccCGCGCa -3'
miRNA:   3'- aCGGCUu--AGCaG-GUGGU-CUUu-GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 19521 0.75 0.392279
Target:  5'- cGCgGAAggCGUCCAUCAGccgcuucACGCGCa -3'
miRNA:   3'- aCGgCUUa-GCAGGUGGUCuu-----UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.