miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 25400 1.13 0.001082
Target:  5'- cUGCCGAAUCGUCCACCAGAAACGCGCa -3'
miRNA:   3'- -ACGGCUUAGCAGGUGGUCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38162 0.8 0.187317
Target:  5'- cGCCGAcgCGcUUCGCCAGAAG-GCGCa -3'
miRNA:   3'- aCGGCUuaGC-AGGUGGUCUUUgCGCG- -5'
12355 5' -52.8 NC_003324.1 + 52658 0.77 0.285592
Target:  5'- cGCCGAAUUGaUCCGCCGc--AUGCGCg -3'
miRNA:   3'- aCGGCUUAGC-AGGUGGUcuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 29083 0.77 0.285592
Target:  5'- cGCCGAAcUCGUCaGCCAGAcgcuUGCGCu -3'
miRNA:   3'- aCGGCUU-AGCAGgUGGUCUuu--GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 40628 0.75 0.356837
Target:  5'- gUGCCG-AUCGaaaaCCACCAGAGGCuucucgccGCGCu -3'
miRNA:   3'- -ACGGCuUAGCa---GGUGGUCUUUG--------CGCG- -5'
12355 5' -52.8 NC_003324.1 + 30475 0.75 0.383206
Target:  5'- gGUCGAAUCGgcgCCGCCgagcaggcccucGGAAACuGCGCc -3'
miRNA:   3'- aCGGCUUAGCa--GGUGG------------UCUUUG-CGCG- -5'
12355 5' -52.8 NC_003324.1 + 19521 0.75 0.392279
Target:  5'- cGCgGAAggCGUCCAUCAGccgcuucACGCGCa -3'
miRNA:   3'- aCGgCUUa-GCAGGUGGUCuu-----UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 52761 0.75 0.392279
Target:  5'- cGCCGGAUCGaCCAuCCAcgcuCGCGCa -3'
miRNA:   3'- aCGGCUUAGCaGGU-GGUcuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 29994 0.74 0.439672
Target:  5'- gGCCGcgcCGUCCagcaugGCCAGcAGCGCGCc -3'
miRNA:   3'- aCGGCuuaGCAGG------UGGUCuUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 6135 0.73 0.447555
Target:  5'- cGCCGAuagCGgacugacccgcgCCGCCuGGAAUGCGCu -3'
miRNA:   3'- aCGGCUua-GCa-----------GGUGGuCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 26261 0.73 0.479841
Target:  5'- cGCC---UCGUCCGCCuGAAACcCGCu -3'
miRNA:   3'- aCGGcuuAGCAGGUGGuCUUUGcGCG- -5'
12355 5' -52.8 NC_003324.1 + 17271 0.72 0.511109
Target:  5'- cGCCGAAagccgCGUCCGaCAGA--CGCGCc -3'
miRNA:   3'- aCGGCUUa----GCAGGUgGUCUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 22142 0.72 0.532418
Target:  5'- uUGCCGucGUCGUCCGCCucgccGACGC-Cg -3'
miRNA:   3'- -ACGGCu-UAGCAGGUGGucu--UUGCGcG- -5'
12355 5' -52.8 NC_003324.1 + 31344 0.72 0.543192
Target:  5'- aGCCG--UCG-CCGCCGcaaAAACGCGCa -3'
miRNA:   3'- aCGGCuuAGCaGGUGGUc--UUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21823 0.72 0.543192
Target:  5'- cGCCG--UCGUCCGCCuucugcaucAGuu-CGCGCa -3'
miRNA:   3'- aCGGCuuAGCAGGUGG---------UCuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 17223 0.72 0.543192
Target:  5'- cGCCGAGU--UCCGCUcauaggucuccgAGAuACGCGCa -3'
miRNA:   3'- aCGGCUUAgcAGGUGG------------UCUuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 46677 0.71 0.554037
Target:  5'- gGCUGGAaagcCGUCCaaGCCAGA-GCGCGUc -3'
miRNA:   3'- aCGGCUUa---GCAGG--UGGUCUuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 3237 0.71 0.564945
Target:  5'- gUGCCGGugcuuUCGgagCuCGCCaAGggGCGCGUc -3'
miRNA:   3'- -ACGGCUu----AGCa--G-GUGG-UCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21383 0.71 0.586919
Target:  5'- aGCCucGAUCGUCUGCCAcGucCGCGCa -3'
miRNA:   3'- aCGGc-UUAGCAGGUGGUcUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 45349 0.71 0.602397
Target:  5'- cGCCGAGcuugagaaagagcgcUgGUCaACCGGugGCGCGCa -3'
miRNA:   3'- aCGGCUU---------------AgCAGgUGGUCuuUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.