miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 36964 0.7 0.619036
Target:  5'- cGCCGugcUGUCCcaaagcauguugcGCCAGGAcucguaGCGCGCa -3'
miRNA:   3'- aCGGCuuaGCAGG-------------UGGUCUU------UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 21356 0.7 0.629034
Target:  5'- gGCCGAgaugaaagcggcagcGUCGggcaaUCCGCUcauccuggaagagauGGAAACGCGCc -3'
miRNA:   3'- aCGGCU---------------UAGC-----AGGUGG---------------UCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 23034 0.7 0.631256
Target:  5'- cGCuCGcAUCG-CCACCGGAgacuggGACGCGg -3'
miRNA:   3'- aCG-GCuUAGCaGGUGGUCU------UUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 43083 0.7 0.631256
Target:  5'- cGCCGAgaauGUCGUCuCGCCAuccgccAGCGgGCa -3'
miRNA:   3'- aCGGCU----UAGCAG-GUGGUcu----UUGCgCG- -5'
12355 5' -52.8 NC_003324.1 + 21076 0.7 0.631256
Target:  5'- cUGCCuuGUCGgCCGCCGcGgcGCGUGCu -3'
miRNA:   3'- -ACGGcuUAGCaGGUGGU-CuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38256 0.7 0.631256
Target:  5'- aUGCCG-AUCG-CCAUCAGGucgggagUGCGCg -3'
miRNA:   3'- -ACGGCuUAGCaGGUGGUCUuu-----GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 13699 0.7 0.639034
Target:  5'- aUGCCGAucgccugcgCGUCUucgcggaauuugcaGCCGGGAAUGCGg -3'
miRNA:   3'- -ACGGCUua-------GCAGG--------------UGGUCUUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 15978 0.7 0.653468
Target:  5'- uUGCCGcuUCGUCgCGuCCuGAGAUGCaGCg -3'
miRNA:   3'- -ACGGCuuAGCAG-GU-GGuCUUUGCG-CG- -5'
12355 5' -52.8 NC_003324.1 + 49086 0.69 0.675599
Target:  5'- gGCCGAAagcggCGUCUauuucgcuGCCGGuGACGCGa -3'
miRNA:   3'- aCGGCUUa----GCAGG--------UGGUCuUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 8120 0.69 0.675599
Target:  5'- gUGCUGAAacUCacCCGCCGGGcagcuGCGCGCu -3'
miRNA:   3'- -ACGGCUU--AGcaGGUGGUCUu----UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 36652 0.69 0.686608
Target:  5'- cGgCGAAggugCCGCCGGAGAUGCGa -3'
miRNA:   3'- aCgGCUUagcaGGUGGUCUUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 9471 0.69 0.697563
Target:  5'- aUGCUGGAUCGgcccgCUACCugaAGAAugGUGg -3'
miRNA:   3'- -ACGGCUUAGCa----GGUGG---UCUUugCGCg -5'
12355 5' -52.8 NC_003324.1 + 31704 0.69 0.708454
Target:  5'- gUGCUGGugacgCGaaCCACCAGGAGCGC-Cg -3'
miRNA:   3'- -ACGGCUua---GCa-GGUGGUCUUUGCGcG- -5'
12355 5' -52.8 NC_003324.1 + 55018 0.68 0.727856
Target:  5'- gUGCUGGAUgagcagcUGUUCAggcauggUCAGGAACGCGCc -3'
miRNA:   3'- -ACGGCUUA-------GCAGGU-------GGUCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 40148 0.68 0.729994
Target:  5'- cGCCG---CGUUCcgGCCAGAccCGCGCa -3'
miRNA:   3'- aCGGCuuaGCAGG--UGGUCUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 16935 0.68 0.74062
Target:  5'- -aCCGAuagAUCGguUCCGCCAGcAGAuCGCGUg -3'
miRNA:   3'- acGGCU---UAGC--AGGUGGUC-UUU-GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 23843 0.68 0.751135
Target:  5'- cGCCGAAUCGgaccCCGauuuCCGGcgcAACGuCGCa -3'
miRNA:   3'- aCGGCUUAGCa---GGU----GGUCu--UUGC-GCG- -5'
12355 5' -52.8 NC_003324.1 + 1529 0.68 0.762558
Target:  5'- cGCCGGAUaCGUCgCGCCGuuuccuuugcguCGCGCu -3'
miRNA:   3'- aCGGCUUA-GCAG-GUGGUcuuu--------GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 28628 0.68 0.771783
Target:  5'- gGcCCGGAUCGUugcgggCCGCCuugu-CGCGCg -3'
miRNA:   3'- aC-GGCUUAGCA------GGUGGucuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 35608 0.68 0.771783
Target:  5'- uUGCCGA--UGUCgGCUucuGcuGCGCGCa -3'
miRNA:   3'- -ACGGCUuaGCAGgUGGu--CuuUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.