miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 31526 0.67 0.829841
Target:  5'- cGCCGuccucGUCGUgagaauggCCGCCAc--GCGCGCc -3'
miRNA:   3'- aCGGCu----UAGCA--------GGUGGUcuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 20915 0.67 0.829841
Target:  5'- gGCCGAcaUGgacCCgACCGGAacggcGAUGCGCg -3'
miRNA:   3'- aCGGCUuaGCa--GG-UGGUCU-----UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 24715 0.67 0.820634
Target:  5'- cGCCGAccuUCGUCCAU----GACGUGUc -3'
miRNA:   3'- aCGGCUu--AGCAGGUGgucuUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 44650 0.67 0.820634
Target:  5'- aUGCCGggU-GUCCAgaUGGuguCGCGCa -3'
miRNA:   3'- -ACGGCuuAgCAGGUg-GUCuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 35504 0.67 0.811225
Target:  5'- aGCCGggUuCGUCUcccgcaccgaggGCgAGGAaaccAUGCGCg -3'
miRNA:   3'- aCGGCuuA-GCAGG------------UGgUCUU----UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 31077 0.67 0.811225
Target:  5'- gGCCuGAUUGUCCguGCCGGuccuugcggcAAUGCGCu -3'
miRNA:   3'- aCGGcUUAGCAGG--UGGUCu---------UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 11443 0.67 0.811225
Target:  5'- aUGUCaGAugGUC-UCCACUGGAA-CGCGCa -3'
miRNA:   3'- -ACGG-CU--UAGcAGGUGGUCUUuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 32343 0.67 0.810273
Target:  5'- cUGgCGAG-CGUCCcgacacgACCGGggGCGCu- -3'
miRNA:   3'- -ACgGCUUaGCAGG-------UGGUCuuUGCGcg -5'
12355 5' -52.8 NC_003324.1 + 25113 0.67 0.795777
Target:  5'- cGCCGGGguagagguucuuggCGaugCCGCCGGuGACGCGa -3'
miRNA:   3'- aCGGCUUa-------------GCa--GGUGGUCuUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 42295 0.67 0.791843
Target:  5'- cGCUGAGUgCG-CCGCCuGccACGUGCc -3'
miRNA:   3'- aCGGCUUA-GCaGGUGGuCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 20997 0.67 0.791843
Target:  5'- cGUCGGAUCG-CCGCaauGAuggcCGCGCc -3'
miRNA:   3'- aCGGCUUAGCaGGUGgu-CUuu--GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 18889 0.67 0.781892
Target:  5'- cGCCGAccuUCGcCgCGCCAuGGAccCGCGCa -3'
miRNA:   3'- aCGGCUu--AGCaG-GUGGU-CUUu-GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 10314 0.67 0.780888
Target:  5'- cGCCGcGUgCaUCCGCUccuagaaacaguaGGggGCGCGCu -3'
miRNA:   3'- aCGGCuUA-GcAGGUGG-------------UCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 137 0.67 0.777867
Target:  5'- aGCCGGAccagcuucaaguguUCGggauaggggauauUCCugUAGAcGGCGCGCg -3'
miRNA:   3'- aCGGCUU--------------AGC-------------AGGugGUCU-UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 35608 0.68 0.771783
Target:  5'- uUGCCGA--UGUCgGCUucuGcuGCGCGCa -3'
miRNA:   3'- -ACGGCUuaGCAGgUGGu--CuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 40046 0.68 0.771783
Target:  5'- cGUCGGc-CGUCCACCguAGuuGCGCGg -3'
miRNA:   3'- aCGGCUuaGCAGGUGG--UCuuUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 28628 0.68 0.771783
Target:  5'- gGcCCGGAUCGUugcgggCCGCCuugu-CGCGCg -3'
miRNA:   3'- aC-GGCUUAGCA------GGUGGucuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 1529 0.68 0.762558
Target:  5'- cGCCGGAUaCGUCgCGCCGuuuccuuugcguCGCGCu -3'
miRNA:   3'- aCGGCUUA-GCAG-GUGGUcuuu--------GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 23843 0.68 0.751135
Target:  5'- cGCCGAAUCGgaccCCGauuuCCGGcgcAACGuCGCa -3'
miRNA:   3'- aCGGCUUAGCa---GGU----GGUCu--UUGC-GCG- -5'
12355 5' -52.8 NC_003324.1 + 16935 0.68 0.74062
Target:  5'- -aCCGAuagAUCGguUCCGCCAGcAGAuCGCGUg -3'
miRNA:   3'- acGGCU---UAGC--AGGUGGUC-UUU-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.