Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12355 | 5' | -52.8 | NC_003324.1 | + | 40148 | 0.68 | 0.729994 |
Target: 5'- cGCCG---CGUUCcgGCCAGAccCGCGCa -3' miRNA: 3'- aCGGCuuaGCAGG--UGGUCUuuGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 55018 | 0.68 | 0.727856 |
Target: 5'- gUGCUGGAUgagcagcUGUUCAggcauggUCAGGAACGCGCc -3' miRNA: 3'- -ACGGCUUA-------GCAGGU-------GGUCUUUGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 31704 | 0.69 | 0.708454 |
Target: 5'- gUGCUGGugacgCGaaCCACCAGGAGCGC-Cg -3' miRNA: 3'- -ACGGCUua---GCa-GGUGGUCUUUGCGcG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 9471 | 0.69 | 0.697563 |
Target: 5'- aUGCUGGAUCGgcccgCUACCugaAGAAugGUGg -3' miRNA: 3'- -ACGGCUUAGCa----GGUGG---UCUUugCGCg -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 36652 | 0.69 | 0.686608 |
Target: 5'- cGgCGAAggugCCGCCGGAGAUGCGa -3' miRNA: 3'- aCgGCUUagcaGGUGGUCUUUGCGCg -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 8120 | 0.69 | 0.675599 |
Target: 5'- gUGCUGAAacUCacCCGCCGGGcagcuGCGCGCu -3' miRNA: 3'- -ACGGCUU--AGcaGGUGGUCUu----UGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 49086 | 0.69 | 0.675599 |
Target: 5'- gGCCGAAagcggCGUCUauuucgcuGCCGGuGACGCGa -3' miRNA: 3'- aCGGCUUa----GCAGG--------UGGUCuUUGCGCg -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 15978 | 0.7 | 0.653468 |
Target: 5'- uUGCCGcuUCGUCgCGuCCuGAGAUGCaGCg -3' miRNA: 3'- -ACGGCuuAGCAG-GU-GGuCUUUGCG-CG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 13699 | 0.7 | 0.639034 |
Target: 5'- aUGCCGAucgccugcgCGUCUucgcggaauuugcaGCCGGGAAUGCGg -3' miRNA: 3'- -ACGGCUua-------GCAGG--------------UGGUCUUUGCGCg -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 23034 | 0.7 | 0.631256 |
Target: 5'- cGCuCGcAUCG-CCACCGGAgacuggGACGCGg -3' miRNA: 3'- aCG-GCuUAGCaGGUGGUCU------UUGCGCg -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 21076 | 0.7 | 0.631256 |
Target: 5'- cUGCCuuGUCGgCCGCCGcGgcGCGUGCu -3' miRNA: 3'- -ACGGcuUAGCaGGUGGU-CuuUGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 38256 | 0.7 | 0.631256 |
Target: 5'- aUGCCG-AUCG-CCAUCAGGucgggagUGCGCg -3' miRNA: 3'- -ACGGCuUAGCaGGUGGUCUuu-----GCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 43083 | 0.7 | 0.631256 |
Target: 5'- cGCCGAgaauGUCGUCuCGCCAuccgccAGCGgGCa -3' miRNA: 3'- aCGGCU----UAGCAG-GUGGUcu----UUGCgCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 21356 | 0.7 | 0.629034 |
Target: 5'- gGCCGAgaugaaagcggcagcGUCGggcaaUCCGCUcauccuggaagagauGGAAACGCGCc -3' miRNA: 3'- aCGGCU---------------UAGC-----AGGUGG---------------UCUUUGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 36964 | 0.7 | 0.619036 |
Target: 5'- cGCCGugcUGUCCcaaagcauguugcGCCAGGAcucguaGCGCGCa -3' miRNA: 3'- aCGGCuuaGCAGG-------------UGGUCUU------UGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 45349 | 0.71 | 0.602397 |
Target: 5'- cGCCGAGcuugagaaagagcgcUgGUCaACCGGugGCGCGCa -3' miRNA: 3'- aCGGCUU---------------AgCAGgUGGUCuuUGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 21383 | 0.71 | 0.586919 |
Target: 5'- aGCCucGAUCGUCUGCCAcGucCGCGCa -3' miRNA: 3'- aCGGc-UUAGCAGGUGGUcUuuGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 3237 | 0.71 | 0.564945 |
Target: 5'- gUGCCGGugcuuUCGgagCuCGCCaAGggGCGCGUc -3' miRNA: 3'- -ACGGCUu----AGCa--G-GUGG-UCuuUGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 46677 | 0.71 | 0.554037 |
Target: 5'- gGCUGGAaagcCGUCCaaGCCAGA-GCGCGUc -3' miRNA: 3'- aCGGCUUa---GCAGG--UGGUCUuUGCGCG- -5' |
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12355 | 5' | -52.8 | NC_003324.1 | + | 21823 | 0.72 | 0.543192 |
Target: 5'- cGCCG--UCGUCCGCCuucugcaucAGuu-CGCGCa -3' miRNA: 3'- aCGGCuuAGCAGGUGG---------UCuuuGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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