miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12355 5' -52.8 NC_003324.1 + 55018 0.68 0.727856
Target:  5'- gUGCUGGAUgagcagcUGUUCAggcauggUCAGGAACGCGCc -3'
miRNA:   3'- -ACGGCUUA-------GCAGGU-------GGUCUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 52761 0.75 0.392279
Target:  5'- cGCCGGAUCGaCCAuCCAcgcuCGCGCa -3'
miRNA:   3'- aCGGCUUAGCaGGU-GGUcuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 52658 0.77 0.285592
Target:  5'- cGCCGAAUUGaUCCGCCGc--AUGCGCg -3'
miRNA:   3'- aCGGCUUAGC-AGGUGGUcuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 50619 0.67 0.829841
Target:  5'- aGCUGcaGAUCGUCaacgAUCAGAucGAgGCGCa -3'
miRNA:   3'- aCGGC--UUAGCAGg---UGGUCU--UUgCGCG- -5'
12355 5' -52.8 NC_003324.1 + 49086 0.69 0.675599
Target:  5'- gGCCGAAagcggCGUCUauuucgcuGCCGGuGACGCGa -3'
miRNA:   3'- aCGGCUUa----GCAGG--------UGGUCuUUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 47780 0.66 0.864457
Target:  5'- aGCau-GUCGUCgaggagGCCGcGAAGCGCGCc -3'
miRNA:   3'- aCGgcuUAGCAGg-----UGGU-CUUUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 46677 0.71 0.554037
Target:  5'- gGCUGGAaagcCGUCCaaGCCAGA-GCGCGUc -3'
miRNA:   3'- aCGGCUUa---GCAGG--UGGUCUuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 45580 0.67 0.829841
Target:  5'- uUGCgGggUUuuaCCugCGGAuguGCGCGCc -3'
miRNA:   3'- -ACGgCuuAGca-GGugGUCUu--UGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 45349 0.71 0.602397
Target:  5'- cGCCGAGcuugagaaagagcgcUgGUCaACCGGugGCGCGCa -3'
miRNA:   3'- aCGGCUU---------------AgCAGgUGGUCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 44650 0.67 0.820634
Target:  5'- aUGCCGggU-GUCCAgaUGGuguCGCGCa -3'
miRNA:   3'- -ACGGCuuAgCAGGUg-GUCuuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 43083 0.7 0.631256
Target:  5'- cGCCGAgaauGUCGUCuCGCCAuccgccAGCGgGCa -3'
miRNA:   3'- aCGGCU----UAGCAG-GUGGUcu----UUGCgCG- -5'
12355 5' -52.8 NC_003324.1 + 42295 0.67 0.791843
Target:  5'- cGCUGAGUgCG-CCGCCuGccACGUGCc -3'
miRNA:   3'- aCGGCUUA-GCaGGUGGuCuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 40628 0.75 0.356837
Target:  5'- gUGCCG-AUCGaaaaCCACCAGAGGCuucucgccGCGCu -3'
miRNA:   3'- -ACGGCuUAGCa---GGUGGUCUUUG--------CGCG- -5'
12355 5' -52.8 NC_003324.1 + 40148 0.68 0.729994
Target:  5'- cGCCG---CGUUCcgGCCAGAccCGCGCa -3'
miRNA:   3'- aCGGCuuaGCAGG--UGGUCUuuGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 40046 0.68 0.771783
Target:  5'- cGUCGGc-CGUCCACCguAGuuGCGCGg -3'
miRNA:   3'- aCGGCUuaGCAGGUGG--UCuuUGCGCg -5'
12355 5' -52.8 NC_003324.1 + 38256 0.7 0.631256
Target:  5'- aUGCCG-AUCG-CCAUCAGGucgggagUGCGCg -3'
miRNA:   3'- -ACGGCuUAGCaGGUGGUCUuu-----GCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38162 0.8 0.187317
Target:  5'- cGCCGAcgCGcUUCGCCAGAAG-GCGCa -3'
miRNA:   3'- aCGGCUuaGC-AGGUGGUCUUUgCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38119 0.66 0.872514
Target:  5'- cGCCGucucguGUCGgUCGgCGGAauguuGACGCGCc -3'
miRNA:   3'- aCGGCu-----UAGCaGGUgGUCU-----UUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 38001 0.66 0.872514
Target:  5'- aUGCCGGAgCGguugCgGCgCAcGggGCGCGUc -3'
miRNA:   3'- -ACGGCUUaGCa---GgUG-GU-CuuUGCGCG- -5'
12355 5' -52.8 NC_003324.1 + 36964 0.7 0.619036
Target:  5'- cGCCGugcUGUCCcaaagcauguugcGCCAGGAcucguaGCGCGCa -3'
miRNA:   3'- aCGGCuuaGCAGG-------------UGGUCUU------UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.