miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 8592 0.67 0.455223
Target:  5'- uGCCGAGGaCCGcGUCAcGgGCGCGGUUu -3'
miRNA:   3'- gCGGUUUC-GGU-CGGUuCgCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 26050 0.67 0.47494
Target:  5'- uGCCGgcGCUcuAGCuCAAGCGCGgcuuCGcGCCa -3'
miRNA:   3'- gCGGUuuCGG--UCG-GUUCGCGU----GC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 8200 0.67 0.47494
Target:  5'- uGCCcggcggguGAGUuuCAGCaCAGGCGCaACGGCg -3'
miRNA:   3'- gCGGu-------UUCG--GUCG-GUUCGCG-UGCCGg -5'
12357 5' -58.3 NC_003324.1 + 41675 0.67 0.465027
Target:  5'- uCGCagaGGGGCUuucCCGAGCGagggACGGCCa -3'
miRNA:   3'- -GCGg--UUUCGGuc-GGUUCGCg---UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 39807 0.67 0.465027
Target:  5'- cCGCCAugugguGGCUgcagaaccgcaGGCCGGGCaCAUGGCg -3'
miRNA:   3'- -GCGGUu-----UCGG-----------UCGGUUCGcGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 25327 0.67 0.491017
Target:  5'- uCGCCuuGGCUuuaagggcGGCCAGGUGCucgaaccgucaguCGGCg -3'
miRNA:   3'- -GCGGuuUCGG--------UCGGUUCGCGu------------GCCGg -5'
12357 5' -58.3 NC_003324.1 + 10600 0.67 0.495075
Target:  5'- uCGCCAcgguaucgagugAGGCgaaaCAGCCAagaAGCGCcauaACGGCg -3'
miRNA:   3'- -GCGGU------------UUCG----GUCGGU---UCGCG----UGCCGg -5'
12357 5' -58.3 NC_003324.1 + 8878 0.67 0.47494
Target:  5'- cCGCgGGAGaugCGGCCAaauuccccacAGCGgGCGGCa -3'
miRNA:   3'- -GCGgUUUCg--GUCGGU----------UCGCgUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 20184 0.67 0.484958
Target:  5'- aGCCucGGUCAGagAGGCGCGCGuaacgcGCCc -3'
miRNA:   3'- gCGGuuUCGGUCggUUCGCGUGC------CGG- -5'
12357 5' -58.3 NC_003324.1 + 39646 0.67 0.484958
Target:  5'- uCGCgu-AGCCAGCCAccgAGCGCGC--CCu -3'
miRNA:   3'- -GCGguuUCGGUCGGU---UCGCGUGccGG- -5'
12357 5' -58.3 NC_003324.1 + 55408 0.67 0.484958
Target:  5'- gCGCCGAAGCCcGCCuugaacaguGGCGUcgugUGGaCCg -3'
miRNA:   3'- -GCGGUUUCGGuCGGu--------UCGCGu---GCC-GG- -5'
12357 5' -58.3 NC_003324.1 + 18582 0.67 0.495075
Target:  5'- aGCCcguauuuuAGGCgGGCCAucuGGUGgGCGGCg -3'
miRNA:   3'- gCGGu-------UUCGgUCGGU---UCGCgUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 41615 0.67 0.495075
Target:  5'- uGCgAGAGCCAcGCCcaccauuGC-CACGGCUc -3'
miRNA:   3'- gCGgUUUCGGU-CGGuu-----CGcGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 16146 0.67 0.505288
Target:  5'- aGCgGGGGCCGcGCCAGGCauCGCuGGCa -3'
miRNA:   3'- gCGgUUUCGGU-CGGUUCGc-GUG-CCGg -5'
12357 5' -58.3 NC_003324.1 + 49845 0.67 0.505288
Target:  5'- uGCCGcGGCUGGCaucaAGGCggaGUACGGCa -3'
miRNA:   3'- gCGGUuUCGGUCGg---UUCG---CGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 28098 0.67 0.47494
Target:  5'- gCGCuCGGAGCCAGCCGgguucucgaucgAGauauccaaccCGCcaaggcggauGCGGCCg -3'
miRNA:   3'- -GCG-GUUUCGGUCGGU------------UC----------GCG----------UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 32096 0.67 0.495075
Target:  5'- gCGCCucGGCUcgucgccggugaGGCCGAGUGCcuUGGUCu -3'
miRNA:   3'- -GCGGuuUCGG------------UCGGUUCGCGu-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 5349 0.67 0.505288
Target:  5'- aGCgAGAucgaggauaucGCCuGCCGcuGGUGCGgCGGCCa -3'
miRNA:   3'- gCGgUUU-----------CGGuCGGU--UCGCGU-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 42762 0.67 0.505288
Target:  5'- uCGCCAGcgguuGCCgguccugguGGCCcGGCGaAUGGCCu -3'
miRNA:   3'- -GCGGUUu----CGG---------UCGGuUCGCgUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 23655 0.67 0.495075
Target:  5'- aCGCCAAauGGgauguggauguaCCGucGCCGAGCGCGCccGCCg -3'
miRNA:   3'- -GCGGUU--UC------------GGU--CGGUUCGCGUGc-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.