Results 21 - 40 of 170 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 40295 | 0.66 | 0.568231 |
Target: 5'- -aCCGAAGCCGGUgAaguucgagaAGCGCuucguCGGCa -3' miRNA: 3'- gcGGUUUCGGUCGgU---------UCGCGu----GCCGg -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 25917 | 0.66 | 0.567163 |
Target: 5'- gCGCCGcauCCAGCUugaggacgaaaccGGGCGCGCaGGCg -3' miRNA: 3'- -GCGGUuucGGUCGG-------------UUCGCGUG-CCGg -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 3169 | 0.66 | 0.546973 |
Target: 5'- uCGCCucgaauGGCaagAGCgGgAGCGCcguGCGGCCa -3' miRNA: 3'- -GCGGuu----UCGg--UCGgU-UCGCG---UGCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 54708 | 0.66 | 0.557573 |
Target: 5'- aGCCAAAuCCGGUCGAaCGCucgauCGGCg -3' miRNA: 3'- gCGGUUUcGGUCGGUUcGCGu----GCCGg -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 29190 | 0.66 | 0.557573 |
Target: 5'- uGUCGAAgguuauGCCGGCaGAGCGCAagcgucUGGCUg -3' miRNA: 3'- gCGGUUU------CGGUCGgUUCGCGU------GCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 15675 | 0.66 | 0.56183 |
Target: 5'- aCGCgauCAAGGCgGGCCAGcgacagggguacauuGCaCACGGCUa -3' miRNA: 3'- -GCG---GUUUCGgUCGGUU---------------CGcGUGCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 35302 | 0.66 | 0.568231 |
Target: 5'- aGuCCGAucgcGCCGGCgGAuuGCGC-CGGCUg -3' miRNA: 3'- gC-GGUUu---CGGUCGgUU--CGCGuGCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 53751 | 0.66 | 0.557573 |
Target: 5'- uCGCCGuaucAAGCuCGGCgcucCAAGgugcCGCACGGCg -3' miRNA: 3'- -GCGGU----UUCG-GUCG----GUUC----GCGUGCCGg -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 2754 | 0.66 | 0.546973 |
Target: 5'- uGCCGAAG-CGGCCAccgcgcuggaAGgGCAaGGUCg -3' miRNA: 3'- gCGGUUUCgGUCGGU----------UCgCGUgCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 29347 | 0.66 | 0.546973 |
Target: 5'- cCGCCGAucgagcGCgAGCCcGGCGaUGCaGGCCc -3' miRNA: 3'- -GCGGUUu-----CGgUCGGuUCGC-GUG-CCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 16623 | 0.66 | 0.523891 |
Target: 5'- aGCC--AGCCccucacccucucGCCGAGCacGCACaGGCCg -3' miRNA: 3'- gCGGuuUCGGu-----------CGGUUCG--CGUG-CCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 14383 | 0.66 | 0.536438 |
Target: 5'- uGCCAAucaacgcGCCGcaaCCGAGCGCGCaaacGCCu -3' miRNA: 3'- gCGGUUu------CGGUc--GGUUCGCGUGc---CGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 18582 | 0.67 | 0.495075 |
Target: 5'- aGCCcguauuuuAGGCgGGCCAucuGGUGgGCGGCg -3' miRNA: 3'- gCGGu-------UUCGgUCGGU---UCGCgUGCCGg -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 55408 | 0.67 | 0.484958 |
Target: 5'- gCGCCGAAGCCcGCCuugaacaguGGCGUcgugUGGaCCg -3' miRNA: 3'- -GCGGUUUCGGuCGGu--------UCGCGu---GCC-GG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 39646 | 0.67 | 0.484958 |
Target: 5'- uCGCgu-AGCCAGCCAccgAGCGCGC--CCu -3' miRNA: 3'- -GCGguuUCGGUCGGU---UCGCGUGccGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 32096 | 0.67 | 0.495075 |
Target: 5'- gCGCCucGGCUcgucgccggugaGGCCGAGUGCcuUGGUCu -3' miRNA: 3'- -GCGGuuUCGG------------UCGGUUCGCGu-GCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 8592 | 0.67 | 0.455223 |
Target: 5'- uGCCGAGGaCCGcGUCAcGgGCGCGGUUu -3' miRNA: 3'- gCGGUUUC-GGU-CGGUuCgCGUGCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 41615 | 0.67 | 0.495075 |
Target: 5'- uGCgAGAGCCAcGCCcaccauuGC-CACGGCUc -3' miRNA: 3'- gCGgUUUCGGU-CGGuu-----CGcGUGCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 41530 | 0.67 | 0.46898 |
Target: 5'- uGCCAAcaacGCguGCCAaacgcuaacgacagcGGCGCG-GGCCu -3' miRNA: 3'- gCGGUUu---CGguCGGU---------------UCGCGUgCCGG- -5' |
|||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 20184 | 0.67 | 0.484958 |
Target: 5'- aGCCucGGUCAGagAGGCGCGCGuaacgcGCCc -3' miRNA: 3'- gCGGuuUCGGUCggUUCGCGUGC------CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home