miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 37056 0.66 0.525975
Target:  5'- aGCCGAcGCCaaccuuGGCCGAauccGCGaaugaGCGGCUg -3'
miRNA:   3'- gCGGUUuCGG------UCGGUU----CGCg----UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 20289 0.66 0.557573
Target:  5'- gGCU---GCCGGCCAuaccgGGCGCguuacGCGcGCCu -3'
miRNA:   3'- gCGGuuuCGGUCGGU-----UCGCG-----UGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 19403 0.66 0.525975
Target:  5'- gCGCCGugcaugAGGUCGGCUAGaugcuGCGCcuUGGCCu -3'
miRNA:   3'- -GCGGU------UUCGGUCGGUU-----CGCGu-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 54708 0.66 0.557573
Target:  5'- aGCCAAAuCCGGUCGAaCGCucgauCGGCg -3'
miRNA:   3'- gCGGUUUcGGUCGGUUcGCGu----GCCGg -5'
12357 5' -58.3 NC_003324.1 + 38002 0.66 0.515589
Target:  5'- uGCCGGAG-CGGUUGcGGCGCACGGg- -3'
miRNA:   3'- gCGGUUUCgGUCGGU-UCGCGUGCCgg -5'
12357 5' -58.3 NC_003324.1 + 38080 0.66 0.536438
Target:  5'- gCGCCuu--CUGGCgAAGCGCGuCGGCg -3'
miRNA:   3'- -GCGGuuucGGUCGgUUCGCGU-GCCGg -5'
12357 5' -58.3 NC_003324.1 + 14383 0.66 0.536438
Target:  5'- uGCCAAucaacgcGCCGcaaCCGAGCGCGCaaacGCCu -3'
miRNA:   3'- gCGGUUu------CGGUc--GGUUCGCGUGc---CGG- -5'
12357 5' -58.3 NC_003324.1 + 30357 0.66 0.568231
Target:  5'- cCGUCAGAGCCuugauGGCGUcgcccuCGGCCa -3'
miRNA:   3'- -GCGGUUUCGGucgguUCGCGu-----GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 40295 0.66 0.568231
Target:  5'- -aCCGAAGCCGGUgAaguucgagaAGCGCuucguCGGCa -3'
miRNA:   3'- gcGGUUUCGGUCGgU---------UCGCGu----GCCGg -5'
12357 5' -58.3 NC_003324.1 + 26774 0.66 0.524933
Target:  5'- uGCCGugaccggGAGCUucGGCUuGGCaGaCGCGGCCg -3'
miRNA:   3'- gCGGU-------UUCGG--UCGGuUCG-C-GUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 52657 0.66 0.567163
Target:  5'- aCGCCGAAuugauccGCCGcauGCgCGAGCGUggAUGGUCg -3'
miRNA:   3'- -GCGGUUU-------CGGU---CG-GUUCGCG--UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 15675 0.66 0.56183
Target:  5'- aCGCgauCAAGGCgGGCCAGcgacagggguacauuGCaCACGGCUa -3'
miRNA:   3'- -GCG---GUUUCGgUCGGUU---------------CGcGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 14516 0.66 0.568231
Target:  5'- aCGCCGgcauGGGCCcagAGCCGGGCGUGauccccaucgaGGCg -3'
miRNA:   3'- -GCGGU----UUCGG---UCGGUUCGCGUg----------CCGg -5'
12357 5' -58.3 NC_003324.1 + 35302 0.66 0.568231
Target:  5'- aGuCCGAucgcGCCGGCgGAuuGCGC-CGGCUg -3'
miRNA:   3'- gC-GGUUu---CGGUCGgUU--CGCGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 399 0.66 0.568231
Target:  5'- cCGCC-AAGCCAuGCCuauugggcuGGCGCAUcccgGaGCCc -3'
miRNA:   3'- -GCGGuUUCGGU-CGGu--------UCGCGUG----C-CGG- -5'
12357 5' -58.3 NC_003324.1 + 53751 0.66 0.557573
Target:  5'- uCGCCGuaucAAGCuCGGCgcucCAAGgugcCGCACGGCg -3'
miRNA:   3'- -GCGGU----UUCG-GUCG----GUUC----GCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 25917 0.66 0.567163
Target:  5'- gCGCCGcauCCAGCUugaggacgaaaccGGGCGCGCaGGCg -3'
miRNA:   3'- -GCGGUuucGGUCGG-------------UUCGCGUG-CCGg -5'
12357 5' -58.3 NC_003324.1 + 39697 0.66 0.515589
Target:  5'- uGCCGcacGUCGcGCCAuGUGCcCGGCCu -3'
miRNA:   3'- gCGGUuu-CGGU-CGGUuCGCGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 35609 0.66 0.525975
Target:  5'- uGCCGAuGUCGGCUucugcuGCGCGCaGCa -3'
miRNA:   3'- gCGGUUuCGGUCGGuu----CGCGUGcCGg -5'
12357 5' -58.3 NC_003324.1 + 21077 0.66 0.515589
Target:  5'- uGCCuu-GUCGGCCGccgcGGCGCGugcugcguCGGCUu -3'
miRNA:   3'- gCGGuuuCGGUCGGU----UCGCGU--------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.