miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 26889 1.12 0.000286
Target:  5'- gCGCCAAAGCCAGCCAAGCGCACGGCCg -3'
miRNA:   3'- -GCGGUUUCGGUCGGUUCGCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 49510 0.77 0.11011
Target:  5'- uGCCAGA-UCAGCCAAGCGcCGCuGCCg -3'
miRNA:   3'- gCGGUUUcGGUCGGUUCGC-GUGcCGG- -5'
12357 5' -58.3 NC_003324.1 + 14573 0.75 0.157264
Target:  5'- gGUCGcGGCCuGCC-GGCGCaaGCGGCCg -3'
miRNA:   3'- gCGGUuUCGGuCGGuUCGCG--UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 17247 0.75 0.157264
Target:  5'- gCGCCAgcGCCucGUCAAuCGCugGGCCa -3'
miRNA:   3'- -GCGGUuuCGGu-CGGUUcGCGugCCGG- -5'
12357 5' -58.3 NC_003324.1 + 8281 0.74 0.165971
Target:  5'- gGUCGAAGU--GCCAGGCGCGCGccGCCg -3'
miRNA:   3'- gCGGUUUCGguCGGUUCGCGUGC--CGG- -5'
12357 5' -58.3 NC_003324.1 + 21937 0.74 0.175108
Target:  5'- gGCCAAGGCC-GCCGAGgagGCcCGGCUg -3'
miRNA:   3'- gCGGUUUCGGuCGGUUCg--CGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 11203 0.74 0.18469
Target:  5'- gGaCCAAGGUCgGGCCAuAGCGCA-GGCCa -3'
miRNA:   3'- gC-GGUUUCGG-UCGGU-UCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 16238 0.74 0.18469
Target:  5'- uGCCGAcG-CGGCC-AGCGCAgGGCCc -3'
miRNA:   3'- gCGGUUuCgGUCGGuUCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 47906 0.74 0.18469
Target:  5'- gCGCCGAuGGCCGGCUuaucCGCugGGUCg -3'
miRNA:   3'- -GCGGUU-UCGGUCGGuuc-GCGugCCGG- -5'
12357 5' -58.3 NC_003324.1 + 20859 0.74 0.189653
Target:  5'- uCGCCAAcguuCCGGCgGuggacaaggAGCGCAUGGCCg -3'
miRNA:   3'- -GCGGUUuc--GGUCGgU---------UCGCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 34523 0.74 0.189653
Target:  5'- cCGCCGAcGCUuGCCAAuGUGCcguCGGCCg -3'
miRNA:   3'- -GCGGUUuCGGuCGGUU-CGCGu--GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 10718 0.73 0.193196
Target:  5'- uCGCCAgucguagcgacacgGAGCCacGGCC-AGCGUugGGCg -3'
miRNA:   3'- -GCGGU--------------UUCGG--UCGGuUCGCGugCCGg -5'
12357 5' -58.3 NC_003324.1 + 42303 0.73 0.205248
Target:  5'- gCGCCGccuGCCAcguGCCGGGCGC-CGGUg -3'
miRNA:   3'- -GCGGUuu-CGGU---CGGUUCGCGuGCCGg -5'
12357 5' -58.3 NC_003324.1 + 32555 0.73 0.205248
Target:  5'- uCGCCGAGgcuGCCGGCgaaggcgaCGAGgGCAUGGCUg -3'
miRNA:   3'- -GCGGUUU---CGGUCG--------GUUCgCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 16240 0.73 0.205248
Target:  5'- cCGCCucgguGCCAGCgAuGCcugGCGCGGCCc -3'
miRNA:   3'- -GCGGuuu--CGGUCGgUuCG---CGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 4846 0.73 0.210689
Target:  5'- uGCCAAGGCCAcCCuugaagauGGCGUugcuuCGGCCu -3'
miRNA:   3'- gCGGUUUCGGUcGGu-------UCGCGu----GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 1510 0.73 0.218514
Target:  5'- gGCC-GGGCCAGCgAggauccggcggcaguGGUGCGCGGCg -3'
miRNA:   3'- gCGGuUUCGGUCGgU---------------UCGCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 35937 0.73 0.221942
Target:  5'- gCGCCAcuGUUcGCCAGGCGCA-GGUCg -3'
miRNA:   3'- -GCGGUuuCGGuCGGUUCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 38248 0.73 0.221942
Target:  5'- gCGCCGGAauGCCGaucGCCAucaggucgggAGUGCGCGGCa -3'
miRNA:   3'- -GCGGUUU--CGGU---CGGU----------UCGCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 31854 0.73 0.221942
Target:  5'- gGCCcgaaGAGGCCGG-CAGGCGUugGcGCCc -3'
miRNA:   3'- gCGG----UUUCGGUCgGUUCGCGugC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.