miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 12076 0.71 0.291042
Target:  5'- aGCCAAaccgguaagacgGGCacCGGUCuguaccugaucgcgGAGCGCGCGGCCu -3'
miRNA:   3'- gCGGUU------------UCG--GUCGG--------------UUCGCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 9640 0.72 0.252324
Target:  5'- gGCCAAcaccGCCGgcaacGCCAAcGCGCugGGCg -3'
miRNA:   3'- gCGGUUu---CGGU-----CGGUU-CGCGugCCGg -5'
12357 5' -58.3 NC_003324.1 + 30251 0.72 0.256841
Target:  5'- cCGCCGAcaccaucggcgaugAuGCgGGCCAAG-GCACGGUCg -3'
miRNA:   3'- -GCGGUU--------------U-CGgUCGGUUCgCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 7715 0.72 0.258797
Target:  5'- gCGCgaaCGAGGUCAGCaCGGcCGCAUGGCCu -3'
miRNA:   3'- -GCG---GUUUCGGUCG-GUUcGCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 27878 0.71 0.265404
Target:  5'- uCGCUGGcguAGCCGGCCAuuaccuuGUGCucgucgaaGCGGCCa -3'
miRNA:   3'- -GCGGUU---UCGGUCGGUu------CGCG--------UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 42057 0.71 0.265404
Target:  5'- uGCCAcguGCCA-UCAAGCGCACGGa- -3'
miRNA:   3'- gCGGUuu-CGGUcGGUUCGCGUGCCgg -5'
12357 5' -58.3 NC_003324.1 + 28457 0.71 0.27695
Target:  5'- aGCCGuuGCCGGCCuuguuccacgucacGAGCGU--GGCCu -3'
miRNA:   3'- gCGGUuuCGGUCGG--------------UUCGCGugCCGG- -5'
12357 5' -58.3 NC_003324.1 + 52854 0.71 0.279029
Target:  5'- gGCCGccGCUacgacuucgauaAGCuCAAGCGCAUGaGCCa -3'
miRNA:   3'- gCGGUuuCGG------------UCG-GUUCGCGUGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 6225 0.71 0.286047
Target:  5'- gGCCGAGGCgCAGCagcAGCGCAgcaaGcGCCa -3'
miRNA:   3'- gCGGUUUCG-GUCGgu-UCGCGUg---C-CGG- -5'
12357 5' -58.3 NC_003324.1 + 44324 0.72 0.245985
Target:  5'- gGCCGAuAGCCucugcAGCCAcGGCGCGCGcugcGCCc -3'
miRNA:   3'- gCGGUU-UCGG-----UCGGU-UCGCGUGC----CGG- -5'
12357 5' -58.3 NC_003324.1 + 31240 0.72 0.239779
Target:  5'- gCGCCAGcgccGCCGGCCGcacuGCGCguuuuuGCGGCg -3'
miRNA:   3'- -GCGGUUu---CGGUCGGUu---CGCG------UGCCGg -5'
12357 5' -58.3 NC_003324.1 + 10210 0.72 0.239779
Target:  5'- gCGCCAAuaucauGCCGGCgCAAGUuaaCGCGGUCa -3'
miRNA:   3'- -GCGGUUu-----CGGUCG-GUUCGc--GUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 47906 0.74 0.18469
Target:  5'- gCGCCGAuGGCCGGCUuaucCGCugGGUCg -3'
miRNA:   3'- -GCGGUU-UCGGUCGGuuc-GCGugCCGG- -5'
12357 5' -58.3 NC_003324.1 + 16238 0.74 0.18469
Target:  5'- uGCCGAcG-CGGCC-AGCGCAgGGCCc -3'
miRNA:   3'- gCGGUUuCgGUCGGuUCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 42303 0.73 0.205248
Target:  5'- gCGCCGccuGCCAcguGCCGGGCGC-CGGUg -3'
miRNA:   3'- -GCGGUuu-CGGU---CGGUUCGCGuGCCGg -5'
12357 5' -58.3 NC_003324.1 + 1510 0.73 0.218514
Target:  5'- gGCC-GGGCCAGCgAggauccggcggcaguGGUGCGCGGCg -3'
miRNA:   3'- gCGGuUUCGGUCGgU---------------UCGCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 38248 0.73 0.221942
Target:  5'- gCGCCGGAauGCCGaucGCCAucaggucgggAGUGCGCGGCa -3'
miRNA:   3'- -GCGGUUU--CGGU---CGGU----------UCGCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 14332 0.72 0.227759
Target:  5'- aCGUCAGAGCgaggCAGCUgcagAAGCGCG-GGCCg -3'
miRNA:   3'- -GCGGUUUCG----GUCGG----UUCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 62 0.72 0.227759
Target:  5'- uGCCGcAGCCAcGCUcuuauGCGC-CGGCCg -3'
miRNA:   3'- gCGGUuUCGGU-CGGuu---CGCGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 43171 0.72 0.233704
Target:  5'- gCGCCAauccGAGCCAGCCucgacgaaggcaAGGCGCACccacGUCu -3'
miRNA:   3'- -GCGGU----UUCGGUCGG------------UUCGCGUGc---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.