miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 62 0.72 0.227759
Target:  5'- uGCCGcAGCCAcGCUcuuauGCGC-CGGCCg -3'
miRNA:   3'- gCGGUuUCGGU-CGGuu---CGCGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 399 0.66 0.568231
Target:  5'- cCGCC-AAGCCAuGCCuauugggcuGGCGCAUcccgGaGCCc -3'
miRNA:   3'- -GCGGuUUCGGU-CGGu--------UCGCGUG----C-CGG- -5'
12357 5' -58.3 NC_003324.1 + 1510 0.73 0.218514
Target:  5'- gGCC-GGGCCAGCgAggauccggcggcaguGGUGCGCGGCg -3'
miRNA:   3'- gCGGuUUCGGUCGgU---------------UCGCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 1740 0.72 0.245985
Target:  5'- cCGUCAgcGUCAG-CAGGCGCA-GGCCg -3'
miRNA:   3'- -GCGGUuuCGGUCgGUUCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 1922 0.7 0.323224
Target:  5'- aGCCAAuGUCAGagAAuGCGCugGGCUa -3'
miRNA:   3'- gCGGUUuCGGUCggUU-CGCGugCCGG- -5'
12357 5' -58.3 NC_003324.1 + 2418 0.68 0.4265
Target:  5'- aCGCCGAugaugaAGCC-GCCGA-CGCcgGCGGCUu -3'
miRNA:   3'- -GCGGUU------UCGGuCGGUUcGCG--UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 2754 0.66 0.546973
Target:  5'- uGCCGAAG-CGGCCAccgcgcuggaAGgGCAaGGUCg -3'
miRNA:   3'- gCGGUUUCgGUCGGU----------UCgCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 2969 0.68 0.398881
Target:  5'- -uUCAAGGUCAGCCAuucggcuuGCGUgucgcuucgaGCGGCCc -3'
miRNA:   3'- gcGGUUUCGGUCGGUu-------CGCG----------UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 3169 0.66 0.546973
Target:  5'- uCGCCucgaauGGCaagAGCgGgAGCGCcguGCGGCCa -3'
miRNA:   3'- -GCGGuu----UCGg--UCGgU-UCGCG---UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 4536 0.71 0.293204
Target:  5'- aCGCCAccgacaagauGAGCCGcGCCGugaucgAGCGCGCgcagguccaGGCCc -3'
miRNA:   3'- -GCGGU----------UUCGGU-CGGU------UCGCGUG---------CCGG- -5'
12357 5' -58.3 NC_003324.1 + 4846 0.73 0.210689
Target:  5'- uGCCAAGGCCAcCCuugaagauGGCGUugcuuCGGCCu -3'
miRNA:   3'- gCGGUUUCGGUcGGu-------UCGCGu----GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 4848 0.68 0.445531
Target:  5'- gCGCCGGcaacaacguugcGGCCGGUCGAGCccuguuCAUgGGCCg -3'
miRNA:   3'- -GCGGUU------------UCGGUCGGUUCGc-----GUG-CCGG- -5'
12357 5' -58.3 NC_003324.1 + 5349 0.67 0.505288
Target:  5'- aGCgAGAucgaggauaucGCCuGCCGcuGGUGCGgCGGCCa -3'
miRNA:   3'- gCGgUUU-----------CGGuCGGU--UCGCGU-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 6225 0.71 0.286047
Target:  5'- gGCCGAGGCgCAGCagcAGCGCAgcaaGcGCCa -3'
miRNA:   3'- gCGGUUUCG-GUCGgu-UCGCGUg---C-CGG- -5'
12357 5' -58.3 NC_003324.1 + 6512 0.67 0.455223
Target:  5'- uCGUCucGGCC-GCUGAGC-CACGGCa -3'
miRNA:   3'- -GCGGuuUCGGuCGGUUCGcGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 7467 0.68 0.4265
Target:  5'- aGCagGAAGCCGGgC-AGCGUGCGGgCa -3'
miRNA:   3'- gCGg-UUUCGGUCgGuUCGCGUGCCgG- -5'
12357 5' -58.3 NC_003324.1 + 7544 0.7 0.339073
Target:  5'- aCGacgaAGGGCCAGCaAGGCGCAC-GCCu -3'
miRNA:   3'- -GCgg--UUUCGGUCGgUUCGCGUGcCGG- -5'
12357 5' -58.3 NC_003324.1 + 7715 0.72 0.258797
Target:  5'- gCGCgaaCGAGGUCAGCaCGGcCGCAUGGCCu -3'
miRNA:   3'- -GCG---GUUUCGGUCG-GUUcGCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 8167 0.68 0.407047
Target:  5'- aGCCAuucaGGGCCAgucccugcucacuGCCcGGCGgCGCGcGCCu -3'
miRNA:   3'- gCGGU----UUCGGU-------------CGGuUCGC-GUGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 8200 0.67 0.47494
Target:  5'- uGCCcggcggguGAGUuuCAGCaCAGGCGCaACGGCg -3'
miRNA:   3'- gCGGu-------UUCG--GUCG-GUUCGCG-UGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.