miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 57244 0.68 0.446495
Target:  5'- uCGCCAAgggucgcaagcGGCCAGCCugcuauuGCGCucagaugcucaacgcCGGUCg -3'
miRNA:   3'- -GCGGUU-----------UCGGUCGGuu-----CGCGu--------------GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 57166 0.71 0.268085
Target:  5'- gGgCGAGGCCAGCCuuGCGCAcCucaagcuuuucagaaGGCCa -3'
miRNA:   3'- gCgGUUUCGGUCGGuuCGCGU-G---------------CCGG- -5'
12357 5' -58.3 NC_003324.1 + 56148 0.68 0.398881
Target:  5'- uCGCgGGuucGCCAGCCuggAAGCcgACGGCCg -3'
miRNA:   3'- -GCGgUUu--CGGUCGG---UUCGcgUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 56026 0.69 0.372435
Target:  5'- gCGCCGuGGUCAagaagaucGCCaAAGuCGcCACGGCCg -3'
miRNA:   3'- -GCGGUuUCGGU--------CGG-UUC-GC-GUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 55586 0.67 0.484958
Target:  5'- uGUCGAGGCCGG-CAGGCuccuGCcCGGCg -3'
miRNA:   3'- gCGGUUUCGGUCgGUUCG----CGuGCCGg -5'
12357 5' -58.3 NC_003324.1 + 55408 0.67 0.484958
Target:  5'- gCGCCGAAGCCcGCCuugaacaguGGCGUcgugUGGaCCg -3'
miRNA:   3'- -GCGGUUUCGGuCGGu--------UCGCGu---GCC-GG- -5'
12357 5' -58.3 NC_003324.1 + 55030 0.68 0.435955
Target:  5'- gCGCC-GGGCaGGCaAGGCGgACGGCUg -3'
miRNA:   3'- -GCGGuUUCGgUCGgUUCGCgUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 54708 0.66 0.557573
Target:  5'- aGCCAAAuCCGGUCGAaCGCucgauCGGCg -3'
miRNA:   3'- gCGGUUUcGGUCGGUUcGCGu----GCCGg -5'
12357 5' -58.3 NC_003324.1 + 54563 0.68 0.4265
Target:  5'- aGUgGAAGCCcGUCucugaaauGgGCGCGGCCg -3'
miRNA:   3'- gCGgUUUCGGuCGGuu------CgCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 54260 0.68 0.40796
Target:  5'- uGCCAuGGaCCGGCaucAGCGC-CGaGCCg -3'
miRNA:   3'- gCGGUuUC-GGUCGgu-UCGCGuGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 54239 0.71 0.279029
Target:  5'- aCGCCGAcaugacgcGGCCagcucccgucgAGCCAAuGCGCAgGcGCCa -3'
miRNA:   3'- -GCGGUU--------UCGG-----------UCGGUU-CGCGUgC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 53751 0.66 0.557573
Target:  5'- uCGCCGuaucAAGCuCGGCgcucCAAGgugcCGCACGGCg -3'
miRNA:   3'- -GCGGU----UUCG-GUCG----GUUC----GCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 53484 0.68 0.40796
Target:  5'- gCGCgGAAGCCgaGGCCGAaUGC-CGGCg -3'
miRNA:   3'- -GCGgUUUCGG--UCGGUUcGCGuGCCGg -5'
12357 5' -58.3 NC_003324.1 + 53019 0.68 0.40796
Target:  5'- -aCCGGAGCaacuguuucCAGCCAGGCGacgauGCGGCg -3'
miRNA:   3'- gcGGUUUCG---------GUCGGUUCGCg----UGCCGg -5'
12357 5' -58.3 NC_003324.1 + 52854 0.71 0.279029
Target:  5'- gGCCGccGCUacgacuucgauaAGCuCAAGCGCAUGaGCCa -3'
miRNA:   3'- gCGGUuuCGG------------UCG-GUUCGCGUGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 52657 0.66 0.567163
Target:  5'- aCGCCGAAuugauccGCCGcauGCgCGAGCGUggAUGGUCg -3'
miRNA:   3'- -GCGGUUU-------CGGU---CG-GUUCGCG--UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 51625 0.69 0.381117
Target:  5'- aCGCCGuuGCCgcaagacggcAGcCCAAGC-CAcCGGCCa -3'
miRNA:   3'- -GCGGUuuCGG----------UC-GGUUCGcGU-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 50040 0.67 0.47494
Target:  5'- gCGCCGAucGCCAuGCUgacGAGCGUGCuGCUg -3'
miRNA:   3'- -GCGGUUu-CGGU-CGG---UUCGCGUGcCGG- -5'
12357 5' -58.3 NC_003324.1 + 50004 0.67 0.465027
Target:  5'- uCGCCGcccacAAGaUCGG-CAAGCGCugGGgCCg -3'
miRNA:   3'- -GCGGU-----UUC-GGUCgGUUCGCGugCC-GG- -5'
12357 5' -58.3 NC_003324.1 + 49987 0.67 0.455223
Target:  5'- aGCgAAGGCgAGCaCGAGCGCGCcgacGCa -3'
miRNA:   3'- gCGgUUUCGgUCG-GUUCGCGUGc---CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.