miRNA display CGI


Results 21 - 40 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 8281 0.74 0.165971
Target:  5'- gGUCGAAGU--GCCAGGCGCGCGccGCCg -3'
miRNA:   3'- gCGGUUUCGguCGGUUCGCGUGC--CGG- -5'
12357 5' -58.3 NC_003324.1 + 8592 0.67 0.455223
Target:  5'- uGCCGAGGaCCGcGUCAcGgGCGCGGUUu -3'
miRNA:   3'- gCGGUUUC-GGU-CGGUuCgCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 8878 0.67 0.47494
Target:  5'- cCGCgGGAGaugCGGCCAaauuccccacAGCGgGCGGCa -3'
miRNA:   3'- -GCGgUUUCg--GUCGGU----------UCGCgUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 9640 0.72 0.252324
Target:  5'- gGCCAAcaccGCCGgcaacGCCAAcGCGCugGGCg -3'
miRNA:   3'- gCGGUUu---CGGU-----CGGUU-CGCGugCCGg -5'
12357 5' -58.3 NC_003324.1 + 10210 0.72 0.239779
Target:  5'- gCGCCAAuaucauGCCGGCgCAAGUuaaCGCGGUCa -3'
miRNA:   3'- -GCGGUUu-----CGGUCG-GUUCGc--GUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 10255 0.7 0.339073
Target:  5'- aGCCGAAGCUgacgGGCCGAGaGguCGGgCa -3'
miRNA:   3'- gCGGUUUCGG----UCGGUUCgCguGCCgG- -5'
12357 5' -58.3 NC_003324.1 + 10600 0.67 0.495075
Target:  5'- uCGCCAcgguaucgagugAGGCgaaaCAGCCAagaAGCGCcauaACGGCg -3'
miRNA:   3'- -GCGGU------------UUCG----GUCGGU---UCGCG----UGCCGg -5'
12357 5' -58.3 NC_003324.1 + 10718 0.73 0.193196
Target:  5'- uCGCCAgucguagcgacacgGAGCCacGGCC-AGCGUugGGCg -3'
miRNA:   3'- -GCGGU--------------UUCGG--UCGGuUCGCGugCCGg -5'
12357 5' -58.3 NC_003324.1 + 11203 0.74 0.18469
Target:  5'- gGaCCAAGGUCgGGCCAuAGCGCA-GGCCa -3'
miRNA:   3'- gC-GGUUUCGG-UCGGU-UCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 12076 0.71 0.291042
Target:  5'- aGCCAAaccgguaagacgGGCacCGGUCuguaccugaucgcgGAGCGCGCGGCCu -3'
miRNA:   3'- gCGGUU------------UCG--GUCGG--------------UUCGCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 13081 0.7 0.339073
Target:  5'- cCGCCcugcagAucGCCAGCCGcgaacAGCGCAgcguUGGCUg -3'
miRNA:   3'- -GCGG------UuuCGGUCGGU-----UCGCGU----GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 14332 0.72 0.227759
Target:  5'- aCGUCAGAGCgaggCAGCUgcagAAGCGCG-GGCCg -3'
miRNA:   3'- -GCGGUUUCG----GUCGG----UUCGCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 14383 0.66 0.536438
Target:  5'- uGCCAAucaacgcGCCGcaaCCGAGCGCGCaaacGCCu -3'
miRNA:   3'- gCGGUUu------CGGUc--GGUUCGCGUGc---CGG- -5'
12357 5' -58.3 NC_003324.1 + 14490 0.71 0.293204
Target:  5'- uCGCgGAAGCCggugcAGCCAAcacUGCGCGGCa -3'
miRNA:   3'- -GCGgUUUCGG-----UCGGUUc--GCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 14516 0.66 0.568231
Target:  5'- aCGCCGgcauGGGCCcagAGCCGGGCGUGauccccaucgaGGCg -3'
miRNA:   3'- -GCGGU----UUCGG---UCGGUUCGCGUg----------CCGg -5'
12357 5' -58.3 NC_003324.1 + 14573 0.75 0.157264
Target:  5'- gGUCGcGGCCuGCC-GGCGCaaGCGGCCg -3'
miRNA:   3'- gCGGUuUCGGuCGGuUCGCG--UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 14669 0.72 0.239779
Target:  5'- cCGCCugcgccGCCGGCCGcuuGCGC-CGGCa -3'
miRNA:   3'- -GCGGuuu---CGGUCGGUu--CGCGuGCCGg -5'
12357 5' -58.3 NC_003324.1 + 14903 0.68 0.445531
Target:  5'- cCGCCGAuGCCGcCCAGGaagcugccgaUGC-CGGCCg -3'
miRNA:   3'- -GCGGUUuCGGUcGGUUC----------GCGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 15450 0.69 0.372435
Target:  5'- aCGCgAAGGUU-GCCAGGgGCGaGGCCa -3'
miRNA:   3'- -GCGgUUUCGGuCGGUUCgCGUgCCGG- -5'
12357 5' -58.3 NC_003324.1 + 15675 0.66 0.56183
Target:  5'- aCGCgauCAAGGCgGGCCAGcgacagggguacauuGCaCACGGCUa -3'
miRNA:   3'- -GCG---GUUUCGgUCGGUU---------------CGcGUGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.