miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 54239 0.71 0.279029
Target:  5'- aCGCCGAcaugacgcGGCCagcucccgucgAGCCAAuGCGCAgGcGCCa -3'
miRNA:   3'- -GCGGUU--------UCGG-----------UCGGUU-CGCGUgC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 52854 0.71 0.279029
Target:  5'- gGCCGccGCUacgacuucgauaAGCuCAAGCGCAUGaGCCa -3'
miRNA:   3'- gCGGUuuCGG------------UCG-GUUCGCGUGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 33460 0.71 0.279029
Target:  5'- cCGCCAGuGGCCGGaguuGCGCGCGgaGCCg -3'
miRNA:   3'- -GCGGUU-UCGGUCgguuCGCGUGC--CGG- -5'
12357 5' -58.3 NC_003324.1 + 36854 0.71 0.279029
Target:  5'- aGCCGGAGCUcgaaaacaccGGCC-AGCGCuccACgGGCCu -3'
miRNA:   3'- gCGGUUUCGG----------UCGGuUCGCG---UG-CCGG- -5'
12357 5' -58.3 NC_003324.1 + 26018 0.71 0.286047
Target:  5'- gGUCAGGGCCuuGCCAAGCuCAUcGCCu -3'
miRNA:   3'- gCGGUUUCGGu-CGGUUCGcGUGcCGG- -5'
12357 5' -58.3 NC_003324.1 + 6225 0.71 0.286047
Target:  5'- gGCCGAGGCgCAGCagcAGCGCAgcaaGcGCCa -3'
miRNA:   3'- gCGGUUUCG-GUCGgu-UCGCGUg---C-CGG- -5'
12357 5' -58.3 NC_003324.1 + 12076 0.71 0.291042
Target:  5'- aGCCAAaccgguaagacgGGCacCGGUCuguaccugaucgcgGAGCGCGCGGCCu -3'
miRNA:   3'- gCGGUU------------UCG--GUCGG--------------UUCGCGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 14490 0.71 0.293204
Target:  5'- uCGCgGAAGCCggugcAGCCAAcacUGCGCGGCa -3'
miRNA:   3'- -GCGgUUUCGG-----UCGGUUc--GCGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 4536 0.71 0.293204
Target:  5'- aCGCCAccgacaagauGAGCCGcGCCGugaucgAGCGCGCgcagguccaGGCCc -3'
miRNA:   3'- -GCGGU----------UUCGGU-CGGU------UCGCGUG---------CCGG- -5'
12357 5' -58.3 NC_003324.1 + 27951 0.71 0.293204
Target:  5'- gGCCGGcuacGCCAGCgAGGacgaaGCGCGcGCCg -3'
miRNA:   3'- gCGGUUu---CGGUCGgUUCg----CGUGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 43797 0.71 0.300499
Target:  5'- uGCCGGGaacGCCGGCaAGGCGCgugaaaucacggAUGGCCg -3'
miRNA:   3'- gCGGUUU---CGGUCGgUUCGCG------------UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 21397 0.71 0.300499
Target:  5'- aCGCgCGAAaucgaggauaucGCCGGCgAGGCGgcgaaCGCGGCCg -3'
miRNA:   3'- -GCG-GUUU------------CGGUCGgUUCGC-----GUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 31344 0.71 0.300499
Target:  5'- aGCCGucGCC-GCCGcaaaaacGCGCaguGCGGCCg -3'
miRNA:   3'- gCGGUuuCGGuCGGUu------CGCG---UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 16318 0.7 0.31551
Target:  5'- gGCCcugcGCUGGCCGcGUcgGCACGGCCu -3'
miRNA:   3'- gCGGuuu-CGGUCGGUuCG--CGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 49923 0.7 0.323224
Target:  5'- cCGCCuugauGCCAGCCGcG-GCACGaGCUg -3'
miRNA:   3'- -GCGGuuu--CGGUCGGUuCgCGUGC-CGG- -5'
12357 5' -58.3 NC_003324.1 + 46048 0.7 0.323224
Target:  5'- uCGUCgAAGGCCAcuuGCCGAGaugaGCGGCCa -3'
miRNA:   3'- -GCGG-UUUCGGU---CGGUUCgcg-UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 1922 0.7 0.323224
Target:  5'- aGCCAAuGUCAGagAAuGCGCugGGCUa -3'
miRNA:   3'- gCGGUUuCGGUCggUU-CGCGugCCGG- -5'
12357 5' -58.3 NC_003324.1 + 24837 0.7 0.323224
Target:  5'- gCGCCGAcaaGGUCGGCCGucuuggcaaucuGcucGCGgGCGGCCu -3'
miRNA:   3'- -GCGGUU---UCGGUCGGU------------U---CGCgUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 40149 0.7 0.32635
Target:  5'- gCGCCGcguuCCGGCCAgacccgcgcaacuacGGUGgACGGCCg -3'
miRNA:   3'- -GCGGUuuc-GGUCGGU---------------UCGCgUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 33363 0.7 0.331079
Target:  5'- gCGUgGuuGCCGGCUccGCGCGCaacuccGGCCa -3'
miRNA:   3'- -GCGgUuuCGGUCGGuuCGCGUG------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.