Results 41 - 60 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12357 | 5' | -58.3 | NC_003324.1 | + | 18582 | 0.67 | 0.495075 |
Target: 5'- aGCCcguauuuuAGGCgGGCCAucuGGUGgGCGGCg -3' miRNA: 3'- gCGGu-------UUCGgUCGGU---UCGCgUGCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 25327 | 0.67 | 0.491017 |
Target: 5'- uCGCCuuGGCUuuaagggcGGCCAGGUGCucgaaccgucaguCGGCg -3' miRNA: 3'- -GCGGuuUCGG--------UCGGUUCGCGu------------GCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 55586 | 0.67 | 0.484958 |
Target: 5'- uGUCGAGGCCGG-CAGGCuccuGCcCGGCg -3' miRNA: 3'- gCGGUUUCGGUCgGUUCG----CGuGCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 20184 | 0.67 | 0.484958 |
Target: 5'- aGCCucGGUCAGagAGGCGCGCGuaacgcGCCc -3' miRNA: 3'- gCGGuuUCGGUCggUUCGCGUGC------CGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 39646 | 0.67 | 0.484958 |
Target: 5'- uCGCgu-AGCCAGCCAccgAGCGCGC--CCu -3' miRNA: 3'- -GCGguuUCGGUCGGU---UCGCGUGccGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 55408 | 0.67 | 0.484958 |
Target: 5'- gCGCCGAAGCCcGCCuugaacaguGGCGUcgugUGGaCCg -3' miRNA: 3'- -GCGGUUUCGGuCGGu--------UCGCGu---GCC-GG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 8200 | 0.67 | 0.47494 |
Target: 5'- uGCCcggcggguGAGUuuCAGCaCAGGCGCaACGGCg -3' miRNA: 3'- gCGGu-------UUCG--GUCG-GUUCGCG-UGCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 26050 | 0.67 | 0.47494 |
Target: 5'- uGCCGgcGCUcuAGCuCAAGCGCGgcuuCGcGCCa -3' miRNA: 3'- gCGGUuuCGG--UCG-GUUCGCGU----GC-CGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 50040 | 0.67 | 0.47494 |
Target: 5'- gCGCCGAucGCCAuGCUgacGAGCGUGCuGCUg -3' miRNA: 3'- -GCGGUUu-CGGU-CGG---UUCGCGUGcCGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 27806 | 0.67 | 0.47494 |
Target: 5'- gCGCCGAAgugguucgguGCCcgcgauaaGGCCgAGGCGCACaucGCCa -3' miRNA: 3'- -GCGGUUU----------CGG--------UCGG-UUCGCGUGc--CGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 8878 | 0.67 | 0.47494 |
Target: 5'- cCGCgGGAGaugCGGCCAaauuccccacAGCGgGCGGCa -3' miRNA: 3'- -GCGgUUUCg--GUCGGU----------UCGCgUGCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 28098 | 0.67 | 0.47494 |
Target: 5'- gCGCuCGGAGCCAGCCGgguucucgaucgAGauauccaaccCGCcaaggcggauGCGGCCg -3' miRNA: 3'- -GCG-GUUUCGGUCGGU------------UC----------GCG----------UGCCGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 41530 | 0.67 | 0.46898 |
Target: 5'- uGCCAAcaacGCguGCCAaacgcuaacgacagcGGCGCG-GGCCu -3' miRNA: 3'- gCGGUUu---CGguCGGU---------------UCGCGUgCCGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 39807 | 0.67 | 0.465027 |
Target: 5'- cCGCCAugugguGGCUgcagaaccgcaGGCCGGGCaCAUGGCg -3' miRNA: 3'- -GCGGUu-----UCGG-----------UCGGUUCGcGUGCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 41675 | 0.67 | 0.465027 |
Target: 5'- uCGCagaGGGGCUuucCCGAGCGagggACGGCCa -3' miRNA: 3'- -GCGg--UUUCGGuc-GGUUCGCg---UGCCGG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 50004 | 0.67 | 0.465027 |
Target: 5'- uCGCCGcccacAAGaUCGG-CAAGCGCugGGgCCg -3' miRNA: 3'- -GCGGU-----UUC-GGUCgGUUCGCGugCC-GG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 18025 | 0.67 | 0.465027 |
Target: 5'- gGCCGgcGCCacgGGCCAuGCGauagGCGGCg -3' miRNA: 3'- gCGGUuuCGG---UCGGUuCGCg---UGCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 24367 | 0.67 | 0.464042 |
Target: 5'- aCGCCAcagccugcgauacGGGCUGGCCGAGaUGguCGGgCa -3' miRNA: 3'- -GCGGU-------------UUCGGUCGGUUC-GCguGCCgG- -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 6512 | 0.67 | 0.455223 |
Target: 5'- uCGUCucGGCC-GCUGAGC-CACGGCa -3' miRNA: 3'- -GCGGuuUCGGuCGGUUCGcGUGCCGg -5' |
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12357 | 5' | -58.3 | NC_003324.1 | + | 8592 | 0.67 | 0.455223 |
Target: 5'- uGCCGAGGaCCGcGUCAcGgGCGCGGUUu -3' miRNA: 3'- gCGGUUUC-GGU-CGGUuCgCGUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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