miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12357 5' -58.3 NC_003324.1 + 35511 0.66 0.527018
Target:  5'- uGCaCGAAGCCGGguucgucucccgcaCCGAgggcgaggaaaccauGCGCggGCGGCCg -3'
miRNA:   3'- gCG-GUUUCGGUC--------------GGUU---------------CGCG--UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 37056 0.66 0.525975
Target:  5'- aGCCGAcGCCaaccuuGGCCGAauccGCGaaugaGCGGCUg -3'
miRNA:   3'- gCGGUUuCGG------UCGGUU----CGCg----UGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 19403 0.66 0.525975
Target:  5'- gCGCCGugcaugAGGUCGGCUAGaugcuGCGCcuUGGCCu -3'
miRNA:   3'- -GCGGU------UUCGGUCGGUU-----CGCGu-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 30486 0.66 0.525975
Target:  5'- gGCCcaaucgGAAGCCuccguauccuGGUCGagGGCgGCAUGGCCg -3'
miRNA:   3'- gCGG------UUUCGG----------UCGGU--UCG-CGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 35609 0.66 0.525975
Target:  5'- uGCCGAuGUCGGCUucugcuGCGCGCaGCa -3'
miRNA:   3'- gCGGUUuCGGUCGGuu----CGCGUGcCGg -5'
12357 5' -58.3 NC_003324.1 + 26774 0.66 0.524933
Target:  5'- uGCCGugaccggGAGCUucGGCUuGGCaGaCGCGGCCg -3'
miRNA:   3'- gCGGU-------UUCGG--UCGGuUCG-C-GUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 16623 0.66 0.523891
Target:  5'- aGCC--AGCCccucacccucucGCCGAGCacGCACaGGCCg -3'
miRNA:   3'- gCGGuuUCGGu-----------CGGUUCG--CGUG-CCGG- -5'
12357 5' -58.3 NC_003324.1 + 21077 0.66 0.515589
Target:  5'- uGCCuu-GUCGGCCGccgcGGCGCGugcugcguCGGCUu -3'
miRNA:   3'- gCGGuuuCGGUCGGU----UCGCGU--------GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 39697 0.66 0.515589
Target:  5'- uGCCGcacGUCGcGCCAuGUGCcCGGCCu -3'
miRNA:   3'- gCGGUuu-CGGU-CGGUuCGCGuGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 38002 0.66 0.515589
Target:  5'- uGCCGGAG-CGGUUGcGGCGCACGGg- -3'
miRNA:   3'- gCGGUUUCgGUCGGU-UCGCGUGCCgg -5'
12357 5' -58.3 NC_003324.1 + 47479 0.66 0.513522
Target:  5'- cCGCCuggcAGGCCugcaucgcauuuGUCGaaccAGCGCGCgGGCCa -3'
miRNA:   3'- -GCGGu---UUCGGu-----------CGGU----UCGCGUG-CCGG- -5'
12357 5' -58.3 NC_003324.1 + 30013 0.66 0.511458
Target:  5'- uCGCCcguccggaccguuGGGCCGcGCCGuccaGCAUGGCCa -3'
miRNA:   3'- -GCGGu------------UUCGGU-CGGUucg-CGUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 49845 0.67 0.505288
Target:  5'- uGCCGcGGCUGGCaucaAGGCggaGUACGGCa -3'
miRNA:   3'- gCGGUuUCGGUCGg---UUCG---CGUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 16146 0.67 0.505288
Target:  5'- aGCgGGGGCCGcGCCAGGCauCGCuGGCa -3'
miRNA:   3'- gCGgUUUCGGU-CGGUUCGc-GUG-CCGg -5'
12357 5' -58.3 NC_003324.1 + 42762 0.67 0.505288
Target:  5'- uCGCCAGcgguuGCCgguccugguGGCCcGGCGaAUGGCCu -3'
miRNA:   3'- -GCGGUUu----CGG---------UCGGuUCGCgUGCCGG- -5'
12357 5' -58.3 NC_003324.1 + 5349 0.67 0.505288
Target:  5'- aGCgAGAucgaggauaucGCCuGCCGcuGGUGCGgCGGCCa -3'
miRNA:   3'- gCGgUUU-----------CGGuCGGU--UCGCGU-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 18582 0.67 0.495075
Target:  5'- aGCCcguauuuuAGGCgGGCCAucuGGUGgGCGGCg -3'
miRNA:   3'- gCGGu-------UUCGgUCGGU---UCGCgUGCCGg -5'
12357 5' -58.3 NC_003324.1 + 32096 0.67 0.495075
Target:  5'- gCGCCucGGCUcgucgccggugaGGCCGAGUGCcuUGGUCu -3'
miRNA:   3'- -GCGGuuUCGG------------UCGGUUCGCGu-GCCGG- -5'
12357 5' -58.3 NC_003324.1 + 23655 0.67 0.495075
Target:  5'- aCGCCAAauGGgauguggauguaCCGucGCCGAGCGCGCccGCCg -3'
miRNA:   3'- -GCGGUU--UC------------GGU--CGGUUCGCGUGc-CGG- -5'
12357 5' -58.3 NC_003324.1 + 41615 0.67 0.495075
Target:  5'- uGCgAGAGCCAcGCCcaccauuGC-CACGGCUc -3'
miRNA:   3'- gCGgUUUCGGU-CGGuu-----CGcGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.