miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 4847 0.68 0.50396
Target:  5'- -gGCGCCGGCaACAACGuu-GCgGCCGg -3'
miRNA:   3'- ggCGUGGCCGgUGUUGCcauUG-CGGC- -5'
12358 3' -57.3 NC_003324.1 + 37746 0.68 0.50396
Target:  5'- gUCGCGgCaGCUugAGCGGgauCGCCGa -3'
miRNA:   3'- -GGCGUgGcCGGugUUGCCauuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 29474 0.68 0.50396
Target:  5'- gCCGC-CUGGCU---GCGGgcGCGUCGg -3'
miRNA:   3'- -GGCGuGGCCGGuguUGCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 47734 0.68 0.50396
Target:  5'- gCGCACCGGCgugcCACAgcucgacgaugGCGGcccgguCGCCGu -3'
miRNA:   3'- gGCGUGGCCG----GUGU-----------UGCCauu---GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5742 0.68 0.502951
Target:  5'- gCgGCACCGGCUACcguuucgAGCGGgaccauuacgGACGCUu -3'
miRNA:   3'- -GgCGUGGCCGGUG-------UUGCCa---------UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 31683 0.68 0.502951
Target:  5'- uCCGagAUCGGCCGCAuccccguGCuGGUGACGCg- -3'
miRNA:   3'- -GGCg-UGGCCGGUGU-------UG-CCAUUGCGgc -5'
12358 3' -57.3 NC_003324.1 + 11996 0.69 0.493908
Target:  5'- -aGC-CCGGCCA-GACGGUcACGCUc -3'
miRNA:   3'- ggCGuGGCCGGUgUUGCCAuUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 20289 0.69 0.483948
Target:  5'- -gGCuGCCGGCCAUAcCGGgcGCGUUa -3'
miRNA:   3'- ggCG-UGGCCGGUGUuGCCauUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 32093 0.69 0.483948
Target:  5'- gCUGCGCCucGGCUcguCGcCGGUGAgGCCGa -3'
miRNA:   3'- -GGCGUGG--CCGGu--GUuGCCAUUgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 30068 0.69 0.483948
Target:  5'- gUGCACCGGCCGgGAucgaugcggaccCGGcUGcCGCCGc -3'
miRNA:   3'- gGCGUGGCCGGUgUU------------GCC-AUuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 9946 0.69 0.474085
Target:  5'- cUCGUAUCcGCCACAccccgcccaaaACGGUuccuGCGCCGc -3'
miRNA:   3'- -GGCGUGGcCGGUGU-----------UGCCAu---UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 24146 0.69 0.474085
Target:  5'- gCGCACCGGCgAgAA-GGUAAagccCGCCa -3'
miRNA:   3'- gGCGUGGCCGgUgUUgCCAUU----GCGGc -5'
12358 3' -57.3 NC_003324.1 + 45332 0.69 0.474085
Target:  5'- -aGCGCUGGUCAac-CGGUGGCGCg- -3'
miRNA:   3'- ggCGUGGCCGGUguuGCCAUUGCGgc -5'
12358 3' -57.3 NC_003324.1 + 6125 0.69 0.464324
Target:  5'- cCCGCGCCuacGCCgAUAGCGGacugacccGCGCCGc -3'
miRNA:   3'- -GGCGUGGc--CGG-UGUUGCCau------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 12152 0.69 0.464324
Target:  5'- cCCGUcuuACCGGUUugGcuGCGGUAuauGCGCUGc -3'
miRNA:   3'- -GGCG---UGGCCGGugU--UGCCAU---UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 27986 0.69 0.442283
Target:  5'- cCCGCACgUGGCCGCuucgacgagcacaaGGUAAUgGCCGg -3'
miRNA:   3'- -GGCGUG-GCCGGUGuug-----------CCAUUG-CGGC- -5'
12358 3' -57.3 NC_003324.1 + 5160 0.7 0.43851
Target:  5'- aUCGCGCCgcuuaagcuaucaGGCCGCGuucggguccuuggcgGCGGUGucgaucgagaucACGCCGu -3'
miRNA:   3'- -GGCGUGG-------------CCGGUGU---------------UGCCAU------------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 49694 0.7 0.426377
Target:  5'- -gGCGCCuGCCAgaaUGACGGUAuCGCCa -3'
miRNA:   3'- ggCGUGGcCGGU---GUUGCCAUuGCGGc -5'
12358 3' -57.3 NC_003324.1 + 42173 0.7 0.426377
Target:  5'- aUCGUACUuGCCgaACGACGGcacuGCGCCGg -3'
miRNA:   3'- -GGCGUGGcCGG--UGUUGCCau--UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 42301 0.7 0.408106
Target:  5'- gUGCGCCGccuGCCACGugcCGG--GCGCCGg -3'
miRNA:   3'- gGCGUGGC---CGGUGUu--GCCauUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.