miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 54249 0.67 0.565916
Target:  5'- gCgGCACCGGUUGCcAUGGaccggcaucAGCGCCGa -3'
miRNA:   3'- -GgCGUGGCCGGUGuUGCCa--------UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 16798 0.67 0.565916
Target:  5'- -gGCAuCCGGCCAgCAG-GGUGACGgCa -3'
miRNA:   3'- ggCGU-GGCCGGU-GUUgCCAUUGCgGc -5'
12358 3' -57.3 NC_003324.1 + 32290 0.67 0.565916
Target:  5'- aCaCGCUGGCgACAACGGccucugcgcGGCGCCGc -3'
miRNA:   3'- gGcGUGGCCGgUGUUGCCa--------UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 23159 0.67 0.565916
Target:  5'- aCGUcuuGCCGGCgC-CcACGGUAugGUCGg -3'
miRNA:   3'- gGCG---UGGCCG-GuGuUGCCAUugCGGC- -5'
12358 3' -57.3 NC_003324.1 + 40067 0.67 0.565916
Target:  5'- gCGCGgguCUGGCCGgAACGc-GGCGCCGa -3'
miRNA:   3'- gGCGU---GGCCGGUgUUGCcaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 25691 0.68 0.555425
Target:  5'- gCCGUGCCGGCgcaGCAGCGGccgacagacuaUGucaucacCGCCGa -3'
miRNA:   3'- -GGCGUGGCCGg--UGUUGCC-----------AUu------GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 21154 0.68 0.555425
Target:  5'- gCCGCGgCGGCCgacaagGCAGCGuu--UGCCGg -3'
miRNA:   3'- -GGCGUgGCCGG------UGUUGCcauuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 32449 0.68 0.554379
Target:  5'- cCCGaccaguuCACCGGCUACAGgaagcCGGgcGAUGCCGc -3'
miRNA:   3'- -GGC-------GUGGCCGGUGUU-----GCCa-UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 9573 0.68 0.544992
Target:  5'- gCCGCcgGCCGuGCCACcauucuucaGGUAGCggGCCGa -3'
miRNA:   3'- -GGCG--UGGC-CGGUGuug------CCAUUG--CGGC- -5'
12358 3' -57.3 NC_003324.1 + 8370 0.68 0.544992
Target:  5'- aUGaCGCUGGCUGCGACGGcGACGacuaCGg -3'
miRNA:   3'- gGC-GUGGCCGGUGUUGCCaUUGCg---GC- -5'
12358 3' -57.3 NC_003324.1 + 23298 0.68 0.537726
Target:  5'- cCCGCACCagaagagcuucaucuGGCgCACGaugcagaGCGGUAccgcgcuCGCCGa -3'
miRNA:   3'- -GGCGUGG---------------CCG-GUGU-------UGCCAUu------GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 27074 0.68 0.534622
Target:  5'- aCCGUugUGGCCGguGCGGcucccugcaucUGGCGCa- -3'
miRNA:   3'- -GGCGugGCCGGUguUGCC-----------AUUGCGgc -5'
12358 3' -57.3 NC_003324.1 + 1186 0.68 0.534622
Target:  5'- aCGCugaaauCCGGCCGCGAUccgAACGUCGu -3'
miRNA:   3'- gGCGu-----GGCCGGUGUUGccaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 18357 0.68 0.533589
Target:  5'- cCCGCGCguCGGCCGauuccguCAGCGGUcGCGgCu -3'
miRNA:   3'- -GGCGUG--GCCGGU-------GUUGCCAuUGCgGc -5'
12358 3' -57.3 NC_003324.1 + 8288 0.68 0.528434
Target:  5'- gUCGuCGCC-GUCGCAGCcagcgucauccgcagGGUAACGCCGu -3'
miRNA:   3'- -GGC-GUGGcCGGUGUUG---------------CCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 31087 0.68 0.524323
Target:  5'- uCCGUGCCGGUCcuuGCGGcaauGCGCUGc -3'
miRNA:   3'- -GGCGUGGCCGGuguUGCCau--UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 29420 0.68 0.523297
Target:  5'- -gGUGCCGGUCGaaaaccucucgguCAGCGGccUGACGCCa -3'
miRNA:   3'- ggCGUGGCCGGU-------------GUUGCC--AUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 4847 0.68 0.50396
Target:  5'- -gGCGCCGGCaACAACGuu-GCgGCCGg -3'
miRNA:   3'- ggCGUGGCCGgUGUUGCcauUG-CGGC- -5'
12358 3' -57.3 NC_003324.1 + 29474 0.68 0.50396
Target:  5'- gCCGC-CUGGCU---GCGGgcGCGUCGg -3'
miRNA:   3'- -GGCGuGGCCGGuguUGCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 37746 0.68 0.50396
Target:  5'- gUCGCGgCaGCUugAGCGGgauCGCCGa -3'
miRNA:   3'- -GGCGUgGcCGGugUUGCCauuGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.