miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 51296 0.67 0.608311
Target:  5'- aUCGCGCCGGaguaaaGCAugGG-GAUGUCGc -3'
miRNA:   3'- -GGCGUGGCCgg----UGUugCCaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 30150 0.67 0.608311
Target:  5'- gCCGCAgCGGCCGgugucgcgacCGGCGGcgugaugGGCGgCGg -3'
miRNA:   3'- -GGCGUgGCCGGU----------GUUGCCa------UUGCgGC- -5'
12358 3' -57.3 NC_003324.1 + 28661 0.67 0.607246
Target:  5'- gCCGCgaACC-GCCAaAACGGUcuaugucgaugcuAACGCCGc -3'
miRNA:   3'- -GGCG--UGGcCGGUgUUGCCA-------------UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 42788 0.67 0.605115
Target:  5'- aCCGCAUCGuccgaugggaugauGCCucgcCAGCGGU--UGCCGg -3'
miRNA:   3'- -GGCGUGGC--------------CGGu---GUUGCCAuuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 2798 0.67 0.60192
Target:  5'- aCCGC-CUGGUCACaaGgcugcuucaaaaccuGCGGUAuuuuCGCCGg -3'
miRNA:   3'- -GGCGuGGCCGGUG--U---------------UGCCAUu---GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 54142 0.67 0.597664
Target:  5'- gCGCAUUGGCU-CGACGGgaGCugGCCGc -3'
miRNA:   3'- gGCGUGGCCGGuGUUGCCauUG--CGGC- -5'
12358 3' -57.3 NC_003324.1 + 17691 0.67 0.597664
Target:  5'- gCgGCAUCGuGCU-CAACGGc-GCGCCGg -3'
miRNA:   3'- -GgCGUGGC-CGGuGUUGCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 50648 0.67 0.5966
Target:  5'- gCGCACgaacaucUGcGCUGCGACGGUugcgaAGCGCCa -3'
miRNA:   3'- gGCGUG-------GC-CGGUGUUGCCA-----UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 5690 0.67 0.591287
Target:  5'- aCUGCaaACCGGCCGCuucuacuCGGUGgaaacgaucacggucAgGCCGa -3'
miRNA:   3'- -GGCG--UGGCCGGUGuu-----GCCAU---------------UgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5624 0.67 0.587043
Target:  5'- -gGUugCGGCgGCAAcCGGgaacuUGAUGCCGa -3'
miRNA:   3'- ggCGugGCCGgUGUU-GCC-----AUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 54338 0.67 0.587043
Target:  5'- gCGCugauGCCGGUCcaugGCAAcCGGUGccGCGCCu -3'
miRNA:   3'- gGCG----UGGCCGG----UGUU-GCCAU--UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 29052 0.67 0.587043
Target:  5'- uCCGCcauGCUGGCgAgguccuCGACGGacACGCCGa -3'
miRNA:   3'- -GGCG---UGGCCGgU------GUUGCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 38360 0.67 0.587043
Target:  5'- gCgGCGCUGGUCGCcgucguGCGGgaggaagugGugGCCGa -3'
miRNA:   3'- -GgCGUGGCCGGUGu-----UGCCa--------UugCGGC- -5'
12358 3' -57.3 NC_003324.1 + 7777 0.67 0.580687
Target:  5'- uUCGCGCCGGuguuuCCGggguCGGCGGUGugcagcgacacauaaACGCCa -3'
miRNA:   3'- -GGCGUGGCC-----GGU----GUUGCCAU---------------UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 13344 0.67 0.576458
Target:  5'- gCCGCGCCGGaCCAaacauGCGac-GCGCUGc -3'
miRNA:   3'- -GGCGUGGCC-GGUgu---UGCcauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 55906 0.67 0.576458
Target:  5'- uCCGuCACUGcuGCCGCAAaauccacgaGGgcACGCCGc -3'
miRNA:   3'- -GGC-GUGGC--CGGUGUUg--------CCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 49010 0.67 0.576458
Target:  5'- uUGCAUCGGCCGCccucGCGGccAUGCUu -3'
miRNA:   3'- gGCGUGGCCGGUGu---UGCCauUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 47018 0.67 0.565916
Target:  5'- aCCGCAgCGGCUAUcucgucgauugaGGCGGU--UGCCu -3'
miRNA:   3'- -GGCGUgGCCGGUG------------UUGCCAuuGCGGc -5'
12358 3' -57.3 NC_003324.1 + 40067 0.67 0.565916
Target:  5'- gCGCGgguCUGGCCGgAACGc-GGCGCCGa -3'
miRNA:   3'- gGCGU---GGCCGGUgUUGCcaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 23159 0.67 0.565916
Target:  5'- aCGUcuuGCCGGCgC-CcACGGUAugGUCGg -3'
miRNA:   3'- gGCG---UGGCCG-GuGuUGCCAUugCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.