miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 35497 0.72 0.332244
Target:  5'- gCCGUACCGGCUGCuuCc--AGCGCCGa -3'
miRNA:   3'- -GGCGUGGCCGGUGuuGccaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 38991 0.72 0.332244
Target:  5'- cCUGCGCa-GCCGCAGCGaGUGA-GCCGg -3'
miRNA:   3'- -GGCGUGgcCGGUGUUGC-CAUUgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 11465 0.72 0.340142
Target:  5'- aCGCGCagGGgCACAuuGCGGUcaagAGCGCCGu -3'
miRNA:   3'- gGCGUGg-CCgGUGU--UGCCA----UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 41270 0.71 0.348174
Target:  5'- -aGCACCGGCUugAuGCGGUuaucGACGUCc -3'
miRNA:   3'- ggCGUGGCCGGugU-UGCCA----UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 40147 0.71 0.364641
Target:  5'- gCCGCGuuCCGGCCAgAcccgcgcaacuACGGUGGacgGCCGa -3'
miRNA:   3'- -GGCGU--GGCCGGUgU-----------UGCCAUUg--CGGC- -5'
12358 3' -57.3 NC_003324.1 + 14588 0.71 0.364641
Target:  5'- gCGCaagcgGCCGGCgGCGcagGCGGUAGCGUgGc -3'
miRNA:   3'- gGCG-----UGGCCGgUGU---UGCCAUUGCGgC- -5'
12358 3' -57.3 NC_003324.1 + 24084 0.71 0.390333
Target:  5'- gUGCGCUGcGCC---ACGGUGGCGCUGa -3'
miRNA:   3'- gGCGUGGC-CGGuguUGCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 31325 0.71 0.390333
Target:  5'- aCGCGCagugCGGCCgGCGGCGcUGGCGCUGg -3'
miRNA:   3'- gGCGUG----GCCGG-UGUUGCcAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 26859 0.7 0.398269
Target:  5'- gCCGCcauGCCcuuuucaGGCU-CAAgGGUGACGCCGg -3'
miRNA:   3'- -GGCG---UGG-------CCGGuGUUgCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 16315 0.7 0.408106
Target:  5'- cCUGCGCUGGCCGCGuCGGc-ACgGCCu -3'
miRNA:   3'- -GGCGUGGCCGGUGUuGCCauUG-CGGc -5'
12358 3' -57.3 NC_003324.1 + 31102 0.7 0.408106
Target:  5'- aCCGCGCCGGUCGCuaccaagcgaucGACGaGagcgAACuGCCGg -3'
miRNA:   3'- -GGCGUGGCCGGUG------------UUGC-Ca---UUG-CGGC- -5'
12358 3' -57.3 NC_003324.1 + 42301 0.7 0.408106
Target:  5'- gUGCGCCGccuGCCACGugcCGG--GCGCCGg -3'
miRNA:   3'- gGCGUGGC---CGGUGUu--GCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 17941 0.7 0.408106
Target:  5'- -aGUGCCGGCCGCGACGaGUucgaaaGUCGa -3'
miRNA:   3'- ggCGUGGCCGGUGUUGC-CAuug---CGGC- -5'
12358 3' -57.3 NC_003324.1 + 31246 0.7 0.408106
Target:  5'- gCGcCGCCGGCCGCAcuGCGcGUuuuuGCGgCGg -3'
miRNA:   3'- gGC-GUGGCCGGUGU--UGC-CAu---UGCgGC- -5'
12358 3' -57.3 NC_003324.1 + 42173 0.7 0.426377
Target:  5'- aUCGUACUuGCCgaACGACGGcacuGCGCCGg -3'
miRNA:   3'- -GGCGUGGcCGG--UGUUGCCau--UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 49694 0.7 0.426377
Target:  5'- -gGCGCCuGCCAgaaUGACGGUAuCGCCa -3'
miRNA:   3'- ggCGUGGcCGGU---GUUGCCAUuGCGGc -5'
12358 3' -57.3 NC_003324.1 + 5160 0.7 0.43851
Target:  5'- aUCGCGCCgcuuaagcuaucaGGCCGCGuucggguccuuggcgGCGGUGucgaucgagaucACGCCGu -3'
miRNA:   3'- -GGCGUGG-------------CCGGUGU---------------UGCCAU------------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 27986 0.69 0.442283
Target:  5'- cCCGCACgUGGCCGCuucgacgagcacaaGGUAAUgGCCGg -3'
miRNA:   3'- -GGCGUG-GCCGGUGuug-----------CCAUUG-CGGC- -5'
12358 3' -57.3 NC_003324.1 + 6125 0.69 0.464324
Target:  5'- cCCGCGCCuacGCCgAUAGCGGacugacccGCGCCGc -3'
miRNA:   3'- -GGCGUGGc--CGG-UGUUGCCau------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 12152 0.69 0.464324
Target:  5'- cCCGUcuuACCGGUUugGcuGCGGUAuauGCGCUGc -3'
miRNA:   3'- -GGCG---UGGCCGGugU--UGCCAU---UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.