miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 27150 1.09 0.000763
Target:  5'- gCCGCACCGGCCACAACGGUAACGCCGc -3'
miRNA:   3'- -GGCGUGGCCGGUGUUGCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 14564 0.78 0.125394
Target:  5'- gCUGCACCGGCUuccGCGACGGUGccagcaaggucCGCCGa -3'
miRNA:   3'- -GGCGUGGCCGG---UGUUGCCAUu----------GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 23401 0.78 0.143127
Target:  5'- aCGCGCUcggcuuucucguuGGCCGCGuCGGUGGCGCCc -3'
miRNA:   3'- gGCGUGG-------------CCGGUGUuGCCAUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 24657 0.77 0.151408
Target:  5'- cCUGCGCUGGucgcCCGCAGCGGUGACGaucuuCCGg -3'
miRNA:   3'- -GGCGUGGCC----GGUGUUGCCAUUGC-----GGC- -5'
12358 3' -57.3 NC_003324.1 + 26116 0.76 0.172898
Target:  5'- -aGCGCCGGCa--GAcCGGUGACGCCa -3'
miRNA:   3'- ggCGUGGCCGgugUU-GCCAUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 30074 0.76 0.182232
Target:  5'- gCGaCACCGGCCGCuGCGGcuuccucGACGCCu -3'
miRNA:   3'- gGC-GUGGCCGGUGuUGCCa------UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 23995 0.75 0.212948
Target:  5'- aCGCGCUGGUaggGCGGCGGUAGgGCUGc -3'
miRNA:   3'- gGCGUGGCCGg--UGUUGCCAUUgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 16328 0.74 0.229914
Target:  5'- aCGCAgCGGuCCGCGACGGcguUGCCGu -3'
miRNA:   3'- gGCGUgGCC-GGUGUUGCCauuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5876 0.74 0.241849
Target:  5'- aCCGCAcCCGGCCuuggggAUGACGGccuGCGCCu -3'
miRNA:   3'- -GGCGU-GGCCGG------UGUUGCCau-UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 35191 0.74 0.254296
Target:  5'- aCgGCGCUGGCgACGACGGaaaggcagaUGAUGCCa -3'
miRNA:   3'- -GgCGUGGCCGgUGUUGCC---------AUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 47943 0.73 0.267264
Target:  5'- cCUGaCGCCGGUCAgguacgguuuCAGCGGcAGCGCCGc -3'
miRNA:   3'- -GGC-GUGGCCGGU----------GUUGCCaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 33382 0.73 0.280761
Target:  5'- gCGCAacuCCGGCCACuGGCGGagAACGCUu -3'
miRNA:   3'- gGCGU---GGCCGGUG-UUGCCa-UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 4933 0.73 0.28771
Target:  5'- cUCG-ACCGGCCGCAACGuUGuUGCCGg -3'
miRNA:   3'- -GGCgUGGCCGGUGUUGCcAUuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 35322 0.72 0.302013
Target:  5'- uUGCGCCGGCUGCuGCGGU--UGCUGu -3'
miRNA:   3'- gGCGUGGCCGGUGuUGCCAuuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 44924 0.72 0.309367
Target:  5'- gCUGCcCaCGGCaGCAGCGGgcACGCCa -3'
miRNA:   3'- -GGCGuG-GCCGgUGUUGCCauUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 30335 0.72 0.316857
Target:  5'- cCCGCAUCaucgccgauGGUguCGGCGGUGGCGUCGc -3'
miRNA:   3'- -GGCGUGG---------CCGguGUUGCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 41680 0.72 0.316857
Target:  5'- gCGCACUGuGCCA--ACGGUAgcgauGCGCCa -3'
miRNA:   3'- gGCGUGGC-CGGUguUGCCAU-----UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 17767 0.72 0.324483
Target:  5'- cCCGcCAUCagGGCCAuCAugcCGGUGAUGCCGg -3'
miRNA:   3'- -GGC-GUGG--CCGGU-GUu--GCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 3540 0.72 0.324483
Target:  5'- gCGgaACCGGCUGCAAacggcgcuuCGGUGGCGCCc -3'
miRNA:   3'- gGCg-UGGCCGGUGUU---------GCCAUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 48444 0.72 0.324483
Target:  5'- -aGCGCCGcGCCGagaaGAUGGUGcGCGCCa -3'
miRNA:   3'- ggCGUGGC-CGGUg---UUGCCAU-UGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.