miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 42301 0.7 0.408106
Target:  5'- gUGCGCCGccuGCCACGugcCGG--GCGCCGg -3'
miRNA:   3'- gGCGUGGC---CGGUGUu--GCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 38991 0.72 0.332244
Target:  5'- cCUGCGCa-GCCGCAGCGaGUGA-GCCGg -3'
miRNA:   3'- -GGCGUGgcCGGUGUUGC-CAUUgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 11465 0.72 0.340142
Target:  5'- aCGCGCagGGgCACAuuGCGGUcaagAGCGCCGu -3'
miRNA:   3'- gGCGUGg-CCgGUGU--UGCCA----UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 41270 0.71 0.348174
Target:  5'- -aGCACCGGCUugAuGCGGUuaucGACGUCc -3'
miRNA:   3'- ggCGUGGCCGGugU-UGCCA----UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 14588 0.71 0.364641
Target:  5'- gCGCaagcgGCCGGCgGCGcagGCGGUAGCGUgGc -3'
miRNA:   3'- gGCG-----UGGCCGgUGU---UGCCAUUGCGgC- -5'
12358 3' -57.3 NC_003324.1 + 24084 0.71 0.390333
Target:  5'- gUGCGCUGcGCC---ACGGUGGCGCUGa -3'
miRNA:   3'- gGCGUGGC-CGGuguUGCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 26859 0.7 0.398269
Target:  5'- gCCGCcauGCCcuuuucaGGCU-CAAgGGUGACGCCGg -3'
miRNA:   3'- -GGCG---UGG-------CCGGuGUUgCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 17941 0.7 0.408106
Target:  5'- -aGUGCCGGCCGCGACGaGUucgaaaGUCGa -3'
miRNA:   3'- ggCGUGGCCGGUGUUGC-CAuug---CGGC- -5'
12358 3' -57.3 NC_003324.1 + 31246 0.7 0.408106
Target:  5'- gCGcCGCCGGCCGCAcuGCGcGUuuuuGCGgCGg -3'
miRNA:   3'- gGC-GUGGCCGGUGU--UGC-CAu---UGCgGC- -5'
12358 3' -57.3 NC_003324.1 + 35497 0.72 0.332244
Target:  5'- gCCGUACCGGCUGCuuCc--AGCGCCGa -3'
miRNA:   3'- -GGCGUGGCCGGUGuuGccaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 48444 0.72 0.324483
Target:  5'- -aGCGCCGcGCCGagaaGAUGGUGcGCGCCa -3'
miRNA:   3'- ggCGUGGC-CGGUg---UUGCCAU-UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 17767 0.72 0.324483
Target:  5'- cCCGcCAUCagGGCCAuCAugcCGGUGAUGCCGg -3'
miRNA:   3'- -GGC-GUGG--CCGGU-GUu--GCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 30074 0.76 0.182232
Target:  5'- gCGaCACCGGCCGCuGCGGcuuccucGACGCCu -3'
miRNA:   3'- gGC-GUGGCCGGUGuUGCCa------UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 23995 0.75 0.212948
Target:  5'- aCGCGCUGGUaggGCGGCGGUAGgGCUGc -3'
miRNA:   3'- gGCGUGGCCGg--UGUUGCCAUUgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 16328 0.74 0.229914
Target:  5'- aCGCAgCGGuCCGCGACGGcguUGCCGu -3'
miRNA:   3'- gGCGUgGCC-GGUGUUGCCauuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5876 0.74 0.241849
Target:  5'- aCCGCAcCCGGCCuuggggAUGACGGccuGCGCCu -3'
miRNA:   3'- -GGCGU-GGCCGG------UGUUGCCau-UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 33382 0.73 0.280761
Target:  5'- gCGCAacuCCGGCCACuGGCGGagAACGCUu -3'
miRNA:   3'- gGCGU---GGCCGGUG-UUGCCa-UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 35322 0.72 0.302013
Target:  5'- uUGCGCCGGCUGCuGCGGU--UGCUGu -3'
miRNA:   3'- gGCGUGGCCGGUGuUGCCAuuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 41680 0.72 0.316857
Target:  5'- gCGCACUGuGCCA--ACGGUAgcgauGCGCCa -3'
miRNA:   3'- gGCGUGGC-CGGUguUGCCAU-----UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 3540 0.72 0.324483
Target:  5'- gCGgaACCGGCUGCAAacggcgcuuCGGUGGCGCCc -3'
miRNA:   3'- gGCg-UGGCCGGUGUU---------GCCAUUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.