miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 1186 0.68 0.534622
Target:  5'- aCGCugaaauCCGGCCGCGAUccgAACGUCGu -3'
miRNA:   3'- gGCGu-----GGCCGGUGUUGccaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 2798 0.67 0.60192
Target:  5'- aCCGC-CUGGUCACaaGgcugcuucaaaaccuGCGGUAuuuuCGCCGg -3'
miRNA:   3'- -GGCGuGGCCGGUG--U---------------UGCCAUu---GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 3540 0.72 0.324483
Target:  5'- gCGgaACCGGCUGCAAacggcgcuuCGGUGGCGCCc -3'
miRNA:   3'- gGCg-UGGCCGGUGUU---------GCCAUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 4847 0.68 0.50396
Target:  5'- -gGCGCCGGCaACAACGuu-GCgGCCGg -3'
miRNA:   3'- ggCGUGGCCGgUGUUGCcauUG-CGGC- -5'
12358 3' -57.3 NC_003324.1 + 4933 0.73 0.28771
Target:  5'- cUCG-ACCGGCCGCAACGuUGuUGCCGg -3'
miRNA:   3'- -GGCgUGGCCGGUGUUGCcAUuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5160 0.7 0.43851
Target:  5'- aUCGCGCCgcuuaagcuaucaGGCCGCGuucggguccuuggcgGCGGUGucgaucgagaucACGCCGu -3'
miRNA:   3'- -GGCGUGG-------------CCGGUGU---------------UGCCAU------------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5624 0.67 0.587043
Target:  5'- -gGUugCGGCgGCAAcCGGgaacuUGAUGCCGa -3'
miRNA:   3'- ggCGugGCCGgUGUU-GCC-----AUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5690 0.67 0.591287
Target:  5'- aCUGCaaACCGGCCGCuucuacuCGGUGgaaacgaucacggucAgGCCGa -3'
miRNA:   3'- -GGCG--UGGCCGGUGuu-----GCCAU---------------UgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 5742 0.68 0.502951
Target:  5'- gCgGCACCGGCUACcguuucgAGCGGgaccauuacgGACGCUu -3'
miRNA:   3'- -GgCGUGGCCGGUG-------UUGCCa---------UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 5876 0.74 0.241849
Target:  5'- aCCGCAcCCGGCCuuggggAUGACGGccuGCGCCu -3'
miRNA:   3'- -GGCGU-GGCCGG------UGUUGCCau-UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 6125 0.69 0.464324
Target:  5'- cCCGCGCCuacGCCgAUAGCGGacugacccGCGCCGc -3'
miRNA:   3'- -GGCGUGGc--CGG-UGUUGCCau------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 7777 0.67 0.580687
Target:  5'- uUCGCGCCGGuguuuCCGggguCGGCGGUGugcagcgacacauaaACGCCa -3'
miRNA:   3'- -GGCGUGGCC-----GGU----GUUGCCAU---------------UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 8288 0.68 0.528434
Target:  5'- gUCGuCGCC-GUCGCAGCcagcgucauccgcagGGUAACGCCGu -3'
miRNA:   3'- -GGC-GUGGcCGGUGUUG---------------CCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 8370 0.68 0.544992
Target:  5'- aUGaCGCUGGCUGCGACGGcGACGacuaCGg -3'
miRNA:   3'- gGC-GUGGCCGGUGUUGCCaUUGCg---GC- -5'
12358 3' -57.3 NC_003324.1 + 9573 0.68 0.544992
Target:  5'- gCCGCcgGCCGuGCCACcauucuucaGGUAGCggGCCGa -3'
miRNA:   3'- -GGCG--UGGC-CGGUGuug------CCAUUG--CGGC- -5'
12358 3' -57.3 NC_003324.1 + 9946 0.69 0.474085
Target:  5'- cUCGUAUCcGCCACAccccgcccaaaACGGUuccuGCGCCGc -3'
miRNA:   3'- -GGCGUGGcCGGUGU-----------UGCCAu---UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 10289 0.66 0.629657
Target:  5'- uUGCGCCGG-CAUGAUauUGGCGCCGa -3'
miRNA:   3'- gGCGUGGCCgGUGUUGccAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 11465 0.72 0.340142
Target:  5'- aCGCGCagGGgCACAuuGCGGUcaagAGCGCCGu -3'
miRNA:   3'- gGCGUGg-CCgGUGU--UGCCA----UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 11996 0.69 0.493908
Target:  5'- -aGC-CCGGCCA-GACGGUcACGCUc -3'
miRNA:   3'- ggCGuGGCCGGUgUUGCCAuUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 12152 0.69 0.464324
Target:  5'- cCCGUcuuACCGGUUugGcuGCGGUAuauGCGCUGc -3'
miRNA:   3'- -GGCG---UGGCCGGugU--UGCCAU---UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.