miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 12273 0.67 0.62325
Target:  5'- aCCGU-CCGGCgGCucguuccaguccgcaGACGGUAGCGgCu -3'
miRNA:   3'- -GGCGuGGCCGgUG---------------UUGCCAUUGCgGc -5'
12358 3' -57.3 NC_003324.1 + 13344 0.67 0.576458
Target:  5'- gCCGCGCCGGaCCAaacauGCGac-GCGCUGc -3'
miRNA:   3'- -GGCGUGGCC-GGUgu---UGCcauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 14564 0.78 0.125394
Target:  5'- gCUGCACCGGCUuccGCGACGGUGccagcaaggucCGCCGa -3'
miRNA:   3'- -GGCGUGGCCGG---UGUUGCCAUu----------GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 14588 0.71 0.364641
Target:  5'- gCGCaagcgGCCGGCgGCGcagGCGGUAGCGUgGc -3'
miRNA:   3'- gGCG-----UGGCCGgUGU---UGCCAUUGCGgC- -5'
12358 3' -57.3 NC_003324.1 + 14693 0.68 0.50396
Target:  5'- gCCGUAgcuCCGGCCGCcACGcUAccgccuGCGCCGc -3'
miRNA:   3'- -GGCGU---GGCCGGUGuUGCcAU------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 16126 0.66 0.640338
Target:  5'- cCUGCGCaGGgCGCuuCGGUAGCggggGCCGc -3'
miRNA:   3'- -GGCGUGgCCgGUGuuGCCAUUG----CGGC- -5'
12358 3' -57.3 NC_003324.1 + 16315 0.7 0.408106
Target:  5'- cCUGCGCUGGCCGCGuCGGc-ACgGCCu -3'
miRNA:   3'- -GGCGUGGCCGGUGUuGCCauUG-CGGc -5'
12358 3' -57.3 NC_003324.1 + 16328 0.74 0.229914
Target:  5'- aCGCAgCGGuCCGCGACGGcguUGCCGu -3'
miRNA:   3'- gGCGUgGCC-GGUGUUGCCauuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 16798 0.67 0.565916
Target:  5'- -gGCAuCCGGCCAgCAG-GGUGACGgCa -3'
miRNA:   3'- ggCGU-GGCCGGU-GUUgCCAUUGCgGc -5'
12358 3' -57.3 NC_003324.1 + 17691 0.67 0.597664
Target:  5'- gCgGCAUCGuGCU-CAACGGc-GCGCCGg -3'
miRNA:   3'- -GgCGUGGC-CGGuGUUGCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 17767 0.72 0.324483
Target:  5'- cCCGcCAUCagGGCCAuCAugcCGGUGAUGCCGg -3'
miRNA:   3'- -GGC-GUGG--CCGGU-GUu--GCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 17941 0.7 0.408106
Target:  5'- -aGUGCCGGCCGCGACGaGUucgaaaGUCGa -3'
miRNA:   3'- ggCGUGGCCGGUGUUGC-CAuug---CGGC- -5'
12358 3' -57.3 NC_003324.1 + 18091 0.68 0.50396
Target:  5'- -gGCGCCGGCCAau-CGGUAu--CCGa -3'
miRNA:   3'- ggCGUGGCCGGUguuGCCAUugcGGC- -5'
12358 3' -57.3 NC_003324.1 + 18249 0.66 0.661668
Target:  5'- aUCGCACCcagaGCCACGAccuugcCGGUGucggcgaaaccgGCGUCGa -3'
miRNA:   3'- -GGCGUGGc---CGGUGUU------GCCAU------------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 18306 0.66 0.655276
Target:  5'- gCUGCcCCGGCCu---UGGUGagaccgccaaagcggGCGCCGa -3'
miRNA:   3'- -GGCGuGGCCGGuguuGCCAU---------------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 18357 0.68 0.533589
Target:  5'- cCCGCGCguCGGCCGauuccguCAGCGGUcGCGgCu -3'
miRNA:   3'- -GGCGUG--GCCGGU-------GUUGCCAuUGCgGc -5'
12358 3' -57.3 NC_003324.1 + 20289 0.69 0.483948
Target:  5'- -gGCuGCCGGCCAUAcCGGgcGCGUUa -3'
miRNA:   3'- ggCG-UGGCCGGUGUuGCCauUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 21154 0.68 0.555425
Target:  5'- gCCGCGgCGGCCgacaagGCAGCGuu--UGCCGg -3'
miRNA:   3'- -GGCGUgGCCGG------UGUUGCcauuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 23159 0.67 0.565916
Target:  5'- aCGUcuuGCCGGCgC-CcACGGUAugGUCGg -3'
miRNA:   3'- gGCG---UGGCCG-GuGuUGCCAUugCGGC- -5'
12358 3' -57.3 NC_003324.1 + 23298 0.68 0.537726
Target:  5'- cCCGCACCagaagagcuucaucuGGCgCACGaugcagaGCGGUAccgcgcuCGCCGa -3'
miRNA:   3'- -GGCGUGG---------------CCG-GUGU-------UGCCAUu------GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.