Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12358 | 3' | -57.3 | NC_003324.1 | + | 42301 | 0.7 | 0.408106 |
Target: 5'- gUGCGCCGccuGCCACGugcCGG--GCGCCGg -3' miRNA: 3'- gGCGUGGC---CGGUGUu--GCCauUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 31246 | 0.7 | 0.408106 |
Target: 5'- gCGcCGCCGGCCGCAcuGCGcGUuuuuGCGgCGg -3' miRNA: 3'- gGC-GUGGCCGGUGU--UGC-CAu---UGCgGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 3540 | 0.72 | 0.324483 |
Target: 5'- gCGgaACCGGCUGCAAacggcgcuuCGGUGGCGCCc -3' miRNA: 3'- gGCg-UGGCCGGUGUU---------GCCAUUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 41680 | 0.72 | 0.316857 |
Target: 5'- gCGCACUGuGCCA--ACGGUAgcgauGCGCCa -3' miRNA: 3'- gGCGUGGC-CGGUguUGCCAU-----UGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 35322 | 0.72 | 0.302013 |
Target: 5'- uUGCGCCGGCUGCuGCGGU--UGCUGu -3' miRNA: 3'- gGCGUGGCCGGUGuUGCCAuuGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 33382 | 0.73 | 0.280761 |
Target: 5'- gCGCAacuCCGGCCACuGGCGGagAACGCUu -3' miRNA: 3'- gGCGU---GGCCGGUG-UUGCCa-UUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 5876 | 0.74 | 0.241849 |
Target: 5'- aCCGCAcCCGGCCuuggggAUGACGGccuGCGCCu -3' miRNA: 3'- -GGCGU-GGCCGG------UGUUGCCau-UGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 16328 | 0.74 | 0.229914 |
Target: 5'- aCGCAgCGGuCCGCGACGGcguUGCCGu -3' miRNA: 3'- gGCGUgGCC-GGUGUUGCCauuGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 23995 | 0.75 | 0.212948 |
Target: 5'- aCGCGCUGGUaggGCGGCGGUAGgGCUGc -3' miRNA: 3'- gGCGUGGCCGg--UGUUGCCAUUgCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 30074 | 0.76 | 0.182232 |
Target: 5'- gCGaCACCGGCCGCuGCGGcuuccucGACGCCu -3' miRNA: 3'- gGC-GUGGCCGGUGuUGCCa------UUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 17767 | 0.72 | 0.324483 |
Target: 5'- cCCGcCAUCagGGCCAuCAugcCGGUGAUGCCGg -3' miRNA: 3'- -GGC-GUGG--CCGGU-GUu--GCCAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 48444 | 0.72 | 0.324483 |
Target: 5'- -aGCGCCGcGCCGagaaGAUGGUGcGCGCCa -3' miRNA: 3'- ggCGUGGC-CGGUg---UUGCCAU-UGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 17941 | 0.7 | 0.408106 |
Target: 5'- -aGUGCCGGCCGCGACGaGUucgaaaGUCGa -3' miRNA: 3'- ggCGUGGCCGGUGUUGC-CAuug---CGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 26859 | 0.7 | 0.398269 |
Target: 5'- gCCGCcauGCCcuuuucaGGCU-CAAgGGUGACGCCGg -3' miRNA: 3'- -GGCG---UGG-------CCGGuGUUgCCAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 24084 | 0.71 | 0.390333 |
Target: 5'- gUGCGCUGcGCC---ACGGUGGCGCUGa -3' miRNA: 3'- gGCGUGGC-CGGuguUGCCAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 14588 | 0.71 | 0.364641 |
Target: 5'- gCGCaagcgGCCGGCgGCGcagGCGGUAGCGUgGc -3' miRNA: 3'- gGCG-----UGGCCGgUGU---UGCCAUUGCGgC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 41270 | 0.71 | 0.348174 |
Target: 5'- -aGCACCGGCUugAuGCGGUuaucGACGUCc -3' miRNA: 3'- ggCGUGGCCGGugU-UGCCA----UUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 11465 | 0.72 | 0.340142 |
Target: 5'- aCGCGCagGGgCACAuuGCGGUcaagAGCGCCGu -3' miRNA: 3'- gGCGUGg-CCgGUGU--UGCCA----UUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 38991 | 0.72 | 0.332244 |
Target: 5'- cCUGCGCa-GCCGCAGCGaGUGA-GCCGg -3' miRNA: 3'- -GGCGUGgcCGGUGUUGC-CAUUgCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 35497 | 0.72 | 0.332244 |
Target: 5'- gCCGUACCGGCUGCuuCc--AGCGCCGa -3' miRNA: 3'- -GGCGUGGCCGGUGuuGccaUUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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