miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 57150 0.67 0.62325
Target:  5'- gCGCACCucaagcuuuucagaaGGCCAaGACGGcuugcgAGCGUCGu -3'
miRNA:   3'- gGCGUGG---------------CCGGUgUUGCCa-----UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 55906 0.67 0.576458
Target:  5'- uCCGuCACUGcuGCCGCAAaauccacgaGGgcACGCCGc -3'
miRNA:   3'- -GGC-GUGGC--CGGUGUUg--------CCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 54338 0.67 0.587043
Target:  5'- gCGCugauGCCGGUCcaugGCAAcCGGUGccGCGCCu -3'
miRNA:   3'- gGCG----UGGCCGG----UGUU-GCCAU--UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 54249 0.67 0.565916
Target:  5'- gCgGCACCGGUUGCcAUGGaccggcaucAGCGCCGa -3'
miRNA:   3'- -GgCGUGGCCGGUGuUGCCa--------UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 54142 0.67 0.597664
Target:  5'- gCGCAUUGGCU-CGACGGgaGCugGCCGc -3'
miRNA:   3'- gGCGUGGCCGGuGUUGCCauUG--CGGC- -5'
12358 3' -57.3 NC_003324.1 + 51296 0.67 0.608311
Target:  5'- aUCGCGCCGGaguaaaGCAugGG-GAUGUCGc -3'
miRNA:   3'- -GGCGUGGCCgg----UGUugCCaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 50648 0.67 0.5966
Target:  5'- gCGCACgaacaucUGcGCUGCGACGGUugcgaAGCGCCa -3'
miRNA:   3'- gGCGUG-------GC-CGGUGUUGCCA-----UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 49694 0.7 0.426377
Target:  5'- -gGCGCCuGCCAgaaUGACGGUAuCGCCa -3'
miRNA:   3'- ggCGUGGcCGGU---GUUGCCAUuGCGGc -5'
12358 3' -57.3 NC_003324.1 + 49010 0.67 0.576458
Target:  5'- uUGCAUCGGCCGCccucGCGGccAUGCUu -3'
miRNA:   3'- gGCGUGGCCGGUGu---UGCCauUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 48444 0.72 0.324483
Target:  5'- -aGCGCCGcGCCGagaaGAUGGUGcGCGCCa -3'
miRNA:   3'- ggCGUGGC-CGGUg---UUGCCAU-UGCGGc -5'
12358 3' -57.3 NC_003324.1 + 47943 0.73 0.267264
Target:  5'- cCUGaCGCCGGUCAgguacgguuuCAGCGGcAGCGCCGc -3'
miRNA:   3'- -GGC-GUGGCCGGU----------GUUGCCaUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 47734 0.68 0.50396
Target:  5'- gCGCACCGGCgugcCACAgcucgacgaugGCGGcccgguCGCCGu -3'
miRNA:   3'- gGCGUGGCCG----GUGU-----------UGCCauu---GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 47018 0.67 0.565916
Target:  5'- aCCGCAgCGGCUAUcucgucgauugaGGCGGU--UGCCu -3'
miRNA:   3'- -GGCGUgGCCGGUG------------UUGCCAuuGCGGc -5'
12358 3' -57.3 NC_003324.1 + 45332 0.69 0.474085
Target:  5'- -aGCGCUGGUCAac-CGGUGGCGCg- -3'
miRNA:   3'- ggCGUGGCCGGUguuGCCAUUGCGgc -5'
12358 3' -57.3 NC_003324.1 + 44924 0.72 0.309367
Target:  5'- gCUGCcCaCGGCaGCAGCGGgcACGCCa -3'
miRNA:   3'- -GGCGuG-GCCGgUGUUGCCauUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 44532 0.66 0.671237
Target:  5'- gCCGUuucaaacGCCGGCCAuCAGCGaccgaaGUcucGGCGCCc -3'
miRNA:   3'- -GGCG-------UGGCCGGU-GUUGC------CA---UUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 44427 0.66 0.640338
Target:  5'- -gGCACCGGgCGCcgagacuuCGGUcgcugAugGCCGg -3'
miRNA:   3'- ggCGUGGCCgGUGuu------GCCA-----UugCGGC- -5'
12358 3' -57.3 NC_003324.1 + 44409 0.66 0.628589
Target:  5'- gCGCGCCguGGCUGCAGaggcuauCGGccGCGCCa -3'
miRNA:   3'- gGCGUGG--CCGGUGUU-------GCCauUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 42788 0.67 0.605115
Target:  5'- aCCGCAUCGuccgaugggaugauGCCucgcCAGCGGU--UGCCGg -3'
miRNA:   3'- -GGCGUGGC--------------CGGu---GUUGCCAuuGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 42301 0.7 0.408106
Target:  5'- gUGCGCCGccuGCCACGugcCGG--GCGCCGg -3'
miRNA:   3'- gGCGUGGC---CGGUGUu--GCCauUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.