Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12358 | 3' | -57.3 | NC_003324.1 | + | 38089 | 0.66 | 0.672299 |
Target: 5'- aCGCGCCccgugcGCCGCAAccgcucCGGcAugGCCGc -3' miRNA: 3'- gGCGUGGc-----CGGUGUU------GCCaUugCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 29728 | 0.66 | 0.672299 |
Target: 5'- cUCGaucCCGGCUcagGCGGCGGcguuGCGCCa -3' miRNA: 3'- -GGCgu-GGCCGG---UGUUGCCau--UGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 44532 | 0.66 | 0.671237 |
Target: 5'- gCCGUuucaaacGCCGGCCAuCAGCGaccgaaGUcucGGCGCCc -3' miRNA: 3'- -GGCG-------UGGCCGGU-GUUGC------CA---UUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 18249 | 0.66 | 0.661668 |
Target: 5'- aUCGCACCcagaGCCACGAccuugcCGGUGucggcgaaaccgGCGUCGa -3' miRNA: 3'- -GGCGUGGc---CGGUGUU------GCCAU------------UGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 39081 | 0.66 | 0.661668 |
Target: 5'- aUCGuCACCGGCuCACucgcuGCGGcuGCGCa- -3' miRNA: 3'- -GGC-GUGGCCG-GUGu----UGCCauUGCGgc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 24986 | 0.66 | 0.661668 |
Target: 5'- gCGUGCUGGCgAUggUGGUGACaaaCCGc -3' miRNA: 3'- gGCGUGGCCGgUGuuGCCAUUGc--GGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 39698 | 0.66 | 0.655276 |
Target: 5'- gCCGCAcgucgcgccaugugcCCGGCCu--GCGGUucuGCaGCCa -3' miRNA: 3'- -GGCGU---------------GGCCGGuguUGCCAu--UG-CGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 18306 | 0.66 | 0.655276 |
Target: 5'- gCUGCcCCGGCCu---UGGUGagaccgccaaagcggGCGCCGa -3' miRNA: 3'- -GGCGuGGCCGGuguuGCCAU---------------UGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 27654 | 0.66 | 0.651011 |
Target: 5'- aCCGCuuGCCGuuCGCGACcaccucauGcGUGGCGCCGa -3' miRNA: 3'- -GGCG--UGGCcgGUGUUG--------C-CAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 39786 | 0.66 | 0.651011 |
Target: 5'- aCCGCagGCCGGgCACAugGcGcGACGUgCGg -3' miRNA: 3'- -GGCG--UGGCCgGUGUugC-CaUUGCG-GC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 28701 | 0.66 | 0.651011 |
Target: 5'- cCCGCAacgauCCgGGCCACGAgGGcGACaGCgGg -3' miRNA: 3'- -GGCGU-----GG-CCGGUGUUgCCaUUG-CGgC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 16126 | 0.66 | 0.640338 |
Target: 5'- cCUGCGCaGGgCGCuuCGGUAGCggggGCCGc -3' miRNA: 3'- -GGCGUGgCCgGUGuuGCCAUUG----CGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 44427 | 0.66 | 0.640338 |
Target: 5'- -gGCACCGGgCGCcgagacuuCGGUcgcugAugGCCGg -3' miRNA: 3'- ggCGUGGCCgGUGuu------GCCA-----UugCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 28575 | 0.66 | 0.640338 |
Target: 5'- cCCGCGuuG-CCAUcaagGAUGGUAAgGCCa -3' miRNA: 3'- -GGCGUggCcGGUG----UUGCCAUUgCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 38473 | 0.66 | 0.633929 |
Target: 5'- gCGCACCGgauacguguucGCCACcacuuccucccgcacGACGGcgaccAGCGCCGc -3' miRNA: 3'- gGCGUGGC-----------CGGUG---------------UUGCCa----UUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 42204 | 0.66 | 0.629657 |
Target: 5'- cCCGCGgCGGCauugGCGACGaGUGcgaaGCGCUc -3' miRNA: 3'- -GGCGUgGCCGg---UGUUGC-CAU----UGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 10289 | 0.66 | 0.629657 |
Target: 5'- uUGCGCCGG-CAUGAUauUGGCGCCGa -3' miRNA: 3'- gGCGUGGCCgGUGUUGccAUUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 44409 | 0.66 | 0.628589 |
Target: 5'- gCGCGCCguGGCUGCAGaggcuauCGGccGCGCCa -3' miRNA: 3'- gGCGUGG--CCGGUGUU-------GCCauUGCGGc -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 57150 | 0.67 | 0.62325 |
Target: 5'- gCGCACCucaagcuuuucagaaGGCCAaGACGGcuugcgAGCGUCGu -3' miRNA: 3'- gGCGUGG---------------CCGGUgUUGCCa-----UUGCGGC- -5' |
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12358 | 3' | -57.3 | NC_003324.1 | + | 12273 | 0.67 | 0.62325 |
Target: 5'- aCCGU-CCGGCgGCucguuccaguccgcaGACGGUAGCGgCu -3' miRNA: 3'- -GGCGuGGCCGgUG---------------UUGCCAUUGCgGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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