miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 3' -57.3 NC_003324.1 + 23401 0.78 0.143127
Target:  5'- aCGCGCUcggcuuucucguuGGCCGCGuCGGUGGCGCCc -3'
miRNA:   3'- gGCGUGG-------------CCGGUGUuGCCAUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 23995 0.75 0.212948
Target:  5'- aCGCGCUGGUaggGCGGCGGUAGgGCUGc -3'
miRNA:   3'- gGCGUGGCCGg--UGUUGCCAUUgCGGC- -5'
12358 3' -57.3 NC_003324.1 + 24084 0.71 0.390333
Target:  5'- gUGCGCUGcGCC---ACGGUGGCGCUGa -3'
miRNA:   3'- gGCGUGGC-CGGuguUGCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 24146 0.69 0.474085
Target:  5'- gCGCACCGGCgAgAA-GGUAAagccCGCCa -3'
miRNA:   3'- gGCGUGGCCGgUgUUgCCAUU----GCGGc -5'
12358 3' -57.3 NC_003324.1 + 24657 0.77 0.151408
Target:  5'- cCUGCGCUGGucgcCCGCAGCGGUGACGaucuuCCGg -3'
miRNA:   3'- -GGCGUGGCC----GGUGUUGCCAUUGC-----GGC- -5'
12358 3' -57.3 NC_003324.1 + 24986 0.66 0.661668
Target:  5'- gCGUGCUGGCgAUggUGGUGACaaaCCGc -3'
miRNA:   3'- gGCGUGGCCGgUGuuGCCAUUGc--GGC- -5'
12358 3' -57.3 NC_003324.1 + 25691 0.68 0.555425
Target:  5'- gCCGUGCCGGCgcaGCAGCGGccgacagacuaUGucaucacCGCCGa -3'
miRNA:   3'- -GGCGUGGCCGg--UGUUGCC-----------AUu------GCGGC- -5'
12358 3' -57.3 NC_003324.1 + 26116 0.76 0.172898
Target:  5'- -aGCGCCGGCa--GAcCGGUGACGCCa -3'
miRNA:   3'- ggCGUGGCCGgugUU-GCCAUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 26585 0.67 0.565916
Target:  5'- cCCGCGCCacGCaauuCGACGGUAugucgaGCGCUGc -3'
miRNA:   3'- -GGCGUGGc-CGgu--GUUGCCAU------UGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 26859 0.7 0.398269
Target:  5'- gCCGCcauGCCcuuuucaGGCU-CAAgGGUGACGCCGg -3'
miRNA:   3'- -GGCG---UGG-------CCGGuGUUgCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 27074 0.68 0.534622
Target:  5'- aCCGUugUGGCCGguGCGGcucccugcaucUGGCGCa- -3'
miRNA:   3'- -GGCGugGCCGGUguUGCC-----------AUUGCGgc -5'
12358 3' -57.3 NC_003324.1 + 27150 1.09 0.000763
Target:  5'- gCCGCACCGGCCACAACGGUAACGCCGc -3'
miRNA:   3'- -GGCGUGGCCGGUGUUGCCAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 27654 0.66 0.651011
Target:  5'- aCCGCuuGCCGuuCGCGACcaccucauGcGUGGCGCCGa -3'
miRNA:   3'- -GGCG--UGGCcgGUGUUG--------C-CAUUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 27986 0.69 0.442283
Target:  5'- cCCGCACgUGGCCGCuucgacgagcacaaGGUAAUgGCCGg -3'
miRNA:   3'- -GGCGUG-GCCGGUGuug-----------CCAUUG-CGGC- -5'
12358 3' -57.3 NC_003324.1 + 28575 0.66 0.640338
Target:  5'- cCCGCGuuG-CCAUcaagGAUGGUAAgGCCa -3'
miRNA:   3'- -GGCGUggCcGGUG----UUGCCAUUgCGGc -5'
12358 3' -57.3 NC_003324.1 + 28661 0.67 0.607246
Target:  5'- gCCGCgaACC-GCCAaAACGGUcuaugucgaugcuAACGCCGc -3'
miRNA:   3'- -GGCG--UGGcCGGUgUUGCCA-------------UUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 28701 0.66 0.651011
Target:  5'- cCCGCAacgauCCgGGCCACGAgGGcGACaGCgGg -3'
miRNA:   3'- -GGCGU-----GG-CCGGUGUUgCCaUUG-CGgC- -5'
12358 3' -57.3 NC_003324.1 + 29052 0.67 0.587043
Target:  5'- uCCGCcauGCUGGCgAgguccuCGACGGacACGCCGa -3'
miRNA:   3'- -GGCG---UGGCCGgU------GUUGCCauUGCGGC- -5'
12358 3' -57.3 NC_003324.1 + 29420 0.68 0.523297
Target:  5'- -gGUGCCGGUCGaaaaccucucgguCAGCGGccUGACGCCa -3'
miRNA:   3'- ggCGUGGCCGGU-------------GUUGCC--AUUGCGGc -5'
12358 3' -57.3 NC_003324.1 + 29474 0.68 0.50396
Target:  5'- gCCGC-CUGGCU---GCGGgcGCGUCGg -3'
miRNA:   3'- -GGCGuGGCCGGuguUGCCauUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.