miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12358 5' -52.9 NC_003324.1 + 1100 0.67 0.732784
Target:  5'- aGC-CCGCCGCCGUCAgcgAGCUUa-- -3'
miRNA:   3'- aUGuGGUGGUGGUAGUaa-UCGGAcgc -5'
12358 5' -52.9 NC_003324.1 + 1600 0.67 0.775278
Target:  5'- cGCACCACUGCCGccggauccUCGcUGGCCcgGCc -3'
miRNA:   3'- aUGUGGUGGUGGU--------AGUaAUCGGa-CGc -5'
12358 5' -52.9 NC_003324.1 + 1632 0.7 0.575616
Target:  5'- aACGCCAUCGcaucCCGUCAcgaaacucGGCCUGCGc -3'
miRNA:   3'- aUGUGGUGGU----GGUAGUaa------UCGGACGC- -5'
12358 5' -52.9 NC_003324.1 + 2438 0.67 0.764859
Target:  5'- gACGCCGgcggcuuguuccCCACCAacuUCAagUUGGCCUaGCGc -3'
miRNA:   3'- aUGUGGU------------GGUGGU---AGU--AAUCGGA-CGC- -5'
12358 5' -52.9 NC_003324.1 + 5158 0.67 0.754296
Target:  5'- cGCGCCGCUuaaGCUAUCA--GGCC-GCGu -3'
miRNA:   3'- aUGUGGUGG---UGGUAGUaaUCGGaCGC- -5'
12358 5' -52.9 NC_003324.1 + 10298 0.67 0.764859
Target:  5'- aUACGCCACCACguUCcgccGCgUGCa -3'
miRNA:   3'- -AUGUGGUGGUGguAGuaauCGgACGc -5'
12358 5' -52.9 NC_003324.1 + 10504 0.74 0.361498
Target:  5'- gGCACaUACUAUCGUCA-UGGCCUGCa -3'
miRNA:   3'- aUGUG-GUGGUGGUAGUaAUCGGACGc -5'
12358 5' -52.9 NC_003324.1 + 11868 0.66 0.795632
Target:  5'- gGCACCAUCACCAgugaaguaaagUCu---GuCCUGCGc -3'
miRNA:   3'- aUGUGGUGGUGGU-----------AGuaauC-GGACGC- -5'
12358 5' -52.9 NC_003324.1 + 12317 0.7 0.575616
Target:  5'- aACGCCGCCAUCAUacCAUUcGGCaucuCUGCGa -3'
miRNA:   3'- aUGUGGUGGUGGUA--GUAA-UCG----GACGC- -5'
12358 5' -52.9 NC_003324.1 + 18119 0.68 0.721862
Target:  5'- gGCACuCGCCGCCuAUCGcaUGGCCcGUGg -3'
miRNA:   3'- aUGUG-GUGGUGG-UAGUa-AUCGGaCGC- -5'
12358 5' -52.9 NC_003324.1 + 19634 0.68 0.666078
Target:  5'- aACAUgACCGCCGUCGgcgAGUauaUGCGc -3'
miRNA:   3'- aUGUGgUGGUGGUAGUaa-UCGg--ACGC- -5'
12358 5' -52.9 NC_003324.1 + 24039 0.67 0.747894
Target:  5'- aUGCACuCGCCACCGUCuugaacgacuucGGCC-GCGu -3'
miRNA:   3'- -AUGUG-GUGGUGGUAGuaa---------UCGGaCGC- -5'
12358 5' -52.9 NC_003324.1 + 24845 0.67 0.764859
Target:  5'- -uCACCACCGaCAUCGUaauCCUGCGc -3'
miRNA:   3'- auGUGGUGGUgGUAGUAaucGGACGC- -5'
12358 5' -52.9 NC_003324.1 + 27115 1.07 0.002164
Target:  5'- uUACACCACCACCAUCAUUAGCCUGCGc -3'
miRNA:   3'- -AUGUGGUGGUGGUAGUAAUCGGACGC- -5'
12358 5' -52.9 NC_003324.1 + 30046 0.66 0.824775
Target:  5'- cAUGCCGCCGcCCAUCAcgccGCCggucGCGa -3'
miRNA:   3'- aUGUGGUGGU-GGUAGUaau-CGGa---CGC- -5'
12358 5' -52.9 NC_003324.1 + 30244 0.69 0.643444
Target:  5'- gACGCCACCGCCGacacCAUcGGCgaugaUGCGg -3'
miRNA:   3'- aUGUGGUGGUGGUa---GUAaUCGg----ACGC- -5'
12358 5' -52.9 NC_003324.1 + 30484 0.68 0.699746
Target:  5'- gGCGCCGCCgagcagGCCcUCGgaaacugcGCCUGCGa -3'
miRNA:   3'- aUGUGGUGG------UGGuAGUaau-----CGGACGC- -5'
12358 5' -52.9 NC_003324.1 + 33270 0.68 0.666078
Target:  5'- gACGCCAUCGCCAuagUCAUcgacaUGGCCgacgaagGCa -3'
miRNA:   3'- aUGUGGUGGUGGU---AGUA-----AUCGGa------CGc -5'
12358 5' -52.9 NC_003324.1 + 37770 0.71 0.520342
Target:  5'- aGCGCCuaugacaaACgCACCGUCAUgcGGCUUGCGa -3'
miRNA:   3'- aUGUGG--------UG-GUGGUAGUAa-UCGGACGC- -5'
12358 5' -52.9 NC_003324.1 + 42545 0.66 0.805543
Target:  5'- gGCACCAUUGCCAgUCGU--GCUUGCc -3'
miRNA:   3'- aUGUGGUGGUGGU-AGUAauCGGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.