Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12359 | 5' | -55.3 | NC_003324.1 | + | 27218 | 1.12 | 0.000723 |
Target: 5'- cGGCCAACGUCGCCAACGGGCUCAAGAg -3' miRNA: 3'- -CCGGUUGCAGCGGUUGCCCGAGUUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 31874 | 0.78 | 0.15798 |
Target: 5'- cGCCGACGUUGCCGaauACGGGCcCgAAGAg -3' miRNA: 3'- cCGGUUGCAGCGGU---UGCCCGaG-UUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 17726 | 0.75 | 0.241724 |
Target: 5'- cGCCAACGUCGUCGAuauccuCGGGCcCGAGc -3' miRNA: 3'- cCGGUUGCAGCGGUU------GCCCGaGUUCu -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 51725 | 0.73 | 0.326556 |
Target: 5'- aGGCCGACGcaaUCGCCGA-GGGCgcCAAGc -3' miRNA: 3'- -CCGGUUGC---AGCGGUUgCCCGa-GUUCu -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 34274 | 0.71 | 0.44117 |
Target: 5'- gGGCCGAUG-CGUCAGCcucGGCUuCGAGAc -3' miRNA: 3'- -CCGGUUGCaGCGGUUGc--CCGA-GUUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 25171 | 0.71 | 0.460744 |
Target: 5'- cGCCAACauccagaCGCCAGuCGGGUUUGAGAa -3' miRNA: 3'- cCGGUUGca-----GCGGUU-GCCCGAGUUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 20264 | 0.7 | 0.490938 |
Target: 5'- aGCCGGCGUCau--ACGGGCUCAgcGGGc -3' miRNA: 3'- cCGGUUGCAGcgguUGCCCGAGU--UCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 32367 | 0.7 | 0.490938 |
Target: 5'- aGGCCGuUGUCGCCAGCGuGUUCucuGGc -3' miRNA: 3'- -CCGGUuGCAGCGGUUGCcCGAGuu-CU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 20783 | 0.7 | 0.501207 |
Target: 5'- cGGcCCGugGUCcgGCgCAACGGaGCUCgAAGAg -3' miRNA: 3'- -CC-GGUugCAG--CG-GUUGCC-CGAG-UUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 20858 | 0.69 | 0.532549 |
Target: 5'- cGCCAACGUU-CCGGCGGuGgaCAAGGa -3' miRNA: 3'- cCGGUUGCAGcGGUUGCC-CgaGUUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 31315 | 0.69 | 0.532549 |
Target: 5'- cGGCCGGCGgcgcuggCGCUGGCGGGggCAu-- -3' miRNA: 3'- -CCGGUUGCa------GCGGUUGCCCgaGUucu -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 5465 | 0.69 | 0.55383 |
Target: 5'- aGGCaggCGGCGUCGCCcGCcccacGCUCAAGAc -3' miRNA: 3'- -CCG---GUUGCAGCGGuUGcc---CGAGUUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 32522 | 0.68 | 0.586194 |
Target: 5'- uGGCUGcCGUUGCCAGCGucaUCAAGAa -3' miRNA: 3'- -CCGGUuGCAGCGGUUGCccgAGUUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 18574 | 0.68 | 0.586194 |
Target: 5'- cGCCGugACGcUCGCCAACGaGCUCGc-- -3' miRNA: 3'- cCGGU--UGC-AGCGGUUGCcCGAGUucu -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 18433 | 0.68 | 0.593802 |
Target: 5'- uGGUCAugGUcugcgcgaccuugcCGCCGGuCGGGUUCAuGAc -3' miRNA: 3'- -CCGGUugCA--------------GCGGUU-GCCCGAGUuCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 48728 | 0.68 | 0.597068 |
Target: 5'- cGCCAaccGCGUcggCGCCAGCaGGCUgCAGGc -3' miRNA: 3'- cCGGU---UGCA---GCGGUUGcCCGA-GUUCu -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 10255 | 0.68 | 0.618896 |
Target: 5'- aGCCGAa---GCUGACGGGC-CGAGAg -3' miRNA: 3'- cCGGUUgcagCGGUUGCCCGaGUUCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 56164 | 0.68 | 0.628738 |
Target: 5'- uGGCCAGCGagCuCCAucGCGGGUUCGccagccuGGAa -3' miRNA: 3'- -CCGGUUGCa-GcGGU--UGCCCGAGU-------UCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 28387 | 0.68 | 0.629832 |
Target: 5'- -uCCAACGgauacCGCCcaacAGCGGGCUCGgcauGGAu -3' miRNA: 3'- ccGGUUGCa----GCGG----UUGCCCGAGU----UCU- -5' |
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12359 | 5' | -55.3 | NC_003324.1 | + | 28432 | 0.68 | 0.629832 |
Target: 5'- aGGCCGACGaUGUUc-CGGGCUaCGAGGc -3' miRNA: 3'- -CCGGUUGCaGCGGuuGCCCGA-GUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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