miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12359 5' -55.3 NC_003324.1 + 51725 0.73 0.326556
Target:  5'- aGGCCGACGcaaUCGCCGA-GGGCgcCAAGc -3'
miRNA:   3'- -CCGGUUGC---AGCGGUUgCCCGa-GUUCu -5'
12359 5' -55.3 NC_003324.1 + 34023 0.66 0.758263
Target:  5'- gGGCCGAUGcagaaggcgaGCCAugGGGUgu-AGAa -3'
miRNA:   3'- -CCGGUUGCag--------CGGUugCCCGaguUCU- -5'
12359 5' -55.3 NC_003324.1 + 22503 0.66 0.758263
Target:  5'- cGGCCAugGUguUGCuCAACGGGgUaccgguGAGGa -3'
miRNA:   3'- -CCGGUugCA--GCG-GUUGCCCgAg-----UUCU- -5'
12359 5' -55.3 NC_003324.1 + 15547 0.66 0.758263
Target:  5'- cGGCgaCAugGaaagCGCCGAcCGGGUUCA-GAa -3'
miRNA:   3'- -CCG--GUugCa---GCGGUU-GCCCGAGUuCU- -5'
12359 5' -55.3 NC_003324.1 + 8302 0.66 0.713348
Target:  5'- aGCCAGCGUcauccgcaggguaaCGCCGuCGGcGCUCGu-- -3'
miRNA:   3'- cCGGUUGCA--------------GCGGUuGCC-CGAGUucu -5'
12359 5' -55.3 NC_003324.1 + 32102 0.66 0.705874
Target:  5'- cGGCU--CGUCGCCggUGaGGC-CGAGu -3'
miRNA:   3'- -CCGGuuGCAGCGGuuGC-CCGaGUUCu -5'
12359 5' -55.3 NC_003324.1 + 14553 0.67 0.673496
Target:  5'- aGGCCGACGUgGUCAACauGGGUcgCGGc- -3'
miRNA:   3'- -CCGGUUGCAgCGGUUG--CCCGa-GUUcu -5'
12359 5' -55.3 NC_003324.1 + 38704 0.67 0.662612
Target:  5'- cGGCaaa-GUCGCUccGACGGG-UCGAGAc -3'
miRNA:   3'- -CCGguugCAGCGG--UUGCCCgAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 17623 0.67 0.651699
Target:  5'- aGCaCGAUGcCGCCGAgcuCGGGCcCGAGGa -3'
miRNA:   3'- cCG-GUUGCaGCGGUU---GCCCGaGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 28387 0.68 0.629832
Target:  5'- -uCCAACGgauacCGCCcaacAGCGGGCUCGgcauGGAu -3'
miRNA:   3'- ccGGUUGCa----GCGG----UUGCCCGAGU----UCU- -5'
12359 5' -55.3 NC_003324.1 + 48728 0.68 0.597068
Target:  5'- cGCCAaccGCGUcggCGCCAGCaGGCUgCAGGc -3'
miRNA:   3'- cCGGU---UGCA---GCGGUUGcCCGA-GUUCu -5'
12359 5' -55.3 NC_003324.1 + 18433 0.68 0.593802
Target:  5'- uGGUCAugGUcugcgcgaccuugcCGCCGGuCGGGUUCAuGAc -3'
miRNA:   3'- -CCGGUugCA--------------GCGGUU-GCCCGAGUuCU- -5'
12359 5' -55.3 NC_003324.1 + 5465 0.69 0.55383
Target:  5'- aGGCaggCGGCGUCGCCcGCcccacGCUCAAGAc -3'
miRNA:   3'- -CCG---GUUGCAGCGGuUGcc---CGAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 20264 0.7 0.490938
Target:  5'- aGCCGGCGUCau--ACGGGCUCAgcGGGc -3'
miRNA:   3'- cCGGUUGCAGcgguUGCCCGAGU--UCU- -5'
12359 5' -55.3 NC_003324.1 + 36032 0.66 0.704804
Target:  5'- cGGCaCAccggaguAUGUCGCggucaaCGACGGGCUgccCGAGAa -3'
miRNA:   3'- -CCG-GU-------UGCAGCG------GUUGCCCGA---GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 36835 0.66 0.716539
Target:  5'- cGGCCAGCG-CuCC-ACGGGcCUCGcaucGGAu -3'
miRNA:   3'- -CCGGUUGCaGcGGuUGCCC-GAGU----UCU- -5'
12359 5' -55.3 NC_003324.1 + 11975 0.66 0.727122
Target:  5'- cGGCUuugAAUGUCGCCAGauccGGUUCcGGAa -3'
miRNA:   3'- -CCGG---UUGCAGCGGUUgc--CCGAGuUCU- -5'
12359 5' -55.3 NC_003324.1 + 38162 0.66 0.727122
Target:  5'- cGCCGACGcgcuUCGCCAGaaGGCgcaguaccgCGAGGa -3'
miRNA:   3'- cCGGUUGC----AGCGGUUgcCCGa--------GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 9721 0.66 0.737611
Target:  5'- cGUUGGCGUUGCCGGCGGuguuggcccaGCUCAc-- -3'
miRNA:   3'- cCGGUUGCAGCGGUUGCC----------CGAGUucu -5'
12359 5' -55.3 NC_003324.1 + 27218 1.12 0.000723
Target:  5'- cGGCCAACGUCGCCAACGGGCUCAAGAg -3'
miRNA:   3'- -CCGGUUGCAGCGGUUGCCCGAGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.