miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12359 5' -55.3 NC_003324.1 + 43643 0.67 0.677839
Target:  5'- cGGCUGACGUUGCgCGGCGuguGGCugaugcuggaagccuUCAAGGa -3'
miRNA:   3'- -CCGGUUGCAGCG-GUUGC---CCG---------------AGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 20858 0.69 0.532549
Target:  5'- cGCCAACGUU-CCGGCGGuGgaCAAGGa -3'
miRNA:   3'- cCGGUUGCAGcGGUUGCC-CgaGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 27218 1.12 0.000723
Target:  5'- cGGCCAACGUCGCCAACGGGCUCAAGAg -3'
miRNA:   3'- -CCGGUUGCAGCGGUUGCCCGAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 43084 0.66 0.741777
Target:  5'- cGGCCGGuucucCGUUGCCGacccgcgugaauuugGCGGGUU-GAGAa -3'
miRNA:   3'- -CCGGUU-----GCAGCGGU---------------UGCCCGAgUUCU- -5'
12359 5' -55.3 NC_003324.1 + 9721 0.66 0.737611
Target:  5'- cGUUGGCGUUGCCGGCGGuguuggcccaGCUCAc-- -3'
miRNA:   3'- cCGGUUGCAGCGGUUGCC----------CGAGUucu -5'
12359 5' -55.3 NC_003324.1 + 38162 0.66 0.727122
Target:  5'- cGCCGACGcgcuUCGCCAGaaGGCgcaguaccgCGAGGa -3'
miRNA:   3'- cCGGUUGC----AGCGGUUgcCCGa--------GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 11975 0.66 0.727122
Target:  5'- cGGCUuugAAUGUCGCCAGauccGGUUCcGGAa -3'
miRNA:   3'- -CCGG---UUGCAGCGGUUgc--CCGAGuUCU- -5'
12359 5' -55.3 NC_003324.1 + 36835 0.66 0.716539
Target:  5'- cGGCCAGCG-CuCC-ACGGGcCUCGcaucGGAu -3'
miRNA:   3'- -CCGGUUGCaGcGGuUGCCC-GAGU----UCU- -5'
12359 5' -55.3 NC_003324.1 + 36032 0.66 0.704804
Target:  5'- cGGCaCAccggaguAUGUCGCggucaaCGACGGGCUgccCGAGAa -3'
miRNA:   3'- -CCG-GU-------UGCAGCG------GUUGCCCGA---GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 32522 0.68 0.586194
Target:  5'- uGGCUGcCGUUGCCAGCGucaUCAAGAa -3'
miRNA:   3'- -CCGGUuGCAGCGGUUGCccgAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 56164 0.68 0.628738
Target:  5'- uGGCCAGCGagCuCCAucGCGGGUUCGccagccuGGAa -3'
miRNA:   3'- -CCGGUUGCa-GcGGU--UGCCCGAGU-------UCU- -5'
12359 5' -55.3 NC_003324.1 + 10907 0.67 0.64077
Target:  5'- aGCaCAAUGUCGCCGaugauGCGGGCa----- -3'
miRNA:   3'- cCG-GUUGCAGCGGU-----UGCCCGaguucu -5'
12359 5' -55.3 NC_003324.1 + 50669 0.67 0.673496
Target:  5'- aGGgCGGCGU-GCCAGCccuuuuccgucGGCUCAAGGa -3'
miRNA:   3'- -CCgGUUGCAgCGGUUGc----------CCGAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 10255 0.68 0.618896
Target:  5'- aGCCGAa---GCUGACGGGC-CGAGAg -3'
miRNA:   3'- cCGGUUgcagCGGUUGCCCGaGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 18670 0.67 0.662612
Target:  5'- cGCCcaccaGAUGgccCGCCuaaaauACGGGCUCGAGu -3'
miRNA:   3'- cCGG-----UUGCa--GCGGu-----UGCCCGAGUUCu -5'
12359 5' -55.3 NC_003324.1 + 28432 0.68 0.629832
Target:  5'- aGGCCGACGaUGUUc-CGGGCUaCGAGGc -3'
miRNA:   3'- -CCGGUUGCaGCGGuuGCCCGA-GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 18574 0.68 0.586194
Target:  5'- cGCCGugACGcUCGCCAACGaGCUCGc-- -3'
miRNA:   3'- cCGGU--UGC-AGCGGUUGCcCGAGUucu -5'
12359 5' -55.3 NC_003324.1 + 31315 0.69 0.532549
Target:  5'- cGGCCGGCGgcgcuggCGCUGGCGGGggCAu-- -3'
miRNA:   3'- -CCGGUUGCa------GCGGUUGCCCgaGUucu -5'
12359 5' -55.3 NC_003324.1 + 33519 0.67 0.662612
Target:  5'- cGGCgAGCGUuacacggacaaCGCCGAUGaagcGGCUCGGGc -3'
miRNA:   3'- -CCGgUUGCA-----------GCGGUUGC----CCGAGUUCu -5'
12359 5' -55.3 NC_003324.1 + 49501 0.67 0.662612
Target:  5'- aGCCAaGCGcCGCUGcCGGGCUCGc-- -3'
miRNA:   3'- cCGGU-UGCaGCGGUuGCCCGAGUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.