miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12359 5' -55.3 NC_003324.1 + 10907 0.67 0.64077
Target:  5'- aGCaCAAUGUCGCCGaugauGCGGGCa----- -3'
miRNA:   3'- cCG-GUUGCAGCGGU-----UGCCCGaguucu -5'
12359 5' -55.3 NC_003324.1 + 28432 0.68 0.629832
Target:  5'- aGGCCGACGaUGUUc-CGGGCUaCGAGGc -3'
miRNA:   3'- -CCGGUUGCaGCGGuuGCCCGA-GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 28387 0.68 0.629832
Target:  5'- -uCCAACGgauacCGCCcaacAGCGGGCUCGgcauGGAu -3'
miRNA:   3'- ccGGUUGCa----GCGG----UUGCCCGAGU----UCU- -5'
12359 5' -55.3 NC_003324.1 + 56164 0.68 0.628738
Target:  5'- uGGCCAGCGagCuCCAucGCGGGUUCGccagccuGGAa -3'
miRNA:   3'- -CCGGUUGCa-GcGGU--UGCCCGAGU-------UCU- -5'
12359 5' -55.3 NC_003324.1 + 10255 0.68 0.618896
Target:  5'- aGCCGAa---GCUGACGGGC-CGAGAg -3'
miRNA:   3'- cCGGUUgcagCGGUUGCCCGaGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 48728 0.68 0.597068
Target:  5'- cGCCAaccGCGUcggCGCCAGCaGGCUgCAGGc -3'
miRNA:   3'- cCGGU---UGCA---GCGGUUGcCCGA-GUUCu -5'
12359 5' -55.3 NC_003324.1 + 18433 0.68 0.593802
Target:  5'- uGGUCAugGUcugcgcgaccuugcCGCCGGuCGGGUUCAuGAc -3'
miRNA:   3'- -CCGGUugCA--------------GCGGUU-GCCCGAGUuCU- -5'
12359 5' -55.3 NC_003324.1 + 32522 0.68 0.586194
Target:  5'- uGGCUGcCGUUGCCAGCGucaUCAAGAa -3'
miRNA:   3'- -CCGGUuGCAGCGGUUGCccgAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 18574 0.68 0.586194
Target:  5'- cGCCGugACGcUCGCCAACGaGCUCGc-- -3'
miRNA:   3'- cCGGU--UGC-AGCGGUUGCcCGAGUucu -5'
12359 5' -55.3 NC_003324.1 + 5465 0.69 0.55383
Target:  5'- aGGCaggCGGCGUCGCCcGCcccacGCUCAAGAc -3'
miRNA:   3'- -CCG---GUUGCAGCGGuUGcc---CGAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 20858 0.69 0.532549
Target:  5'- cGCCAACGUU-CCGGCGGuGgaCAAGGa -3'
miRNA:   3'- cCGGUUGCAGcGGUUGCC-CgaGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 31315 0.69 0.532549
Target:  5'- cGGCCGGCGgcgcuggCGCUGGCGGGggCAu-- -3'
miRNA:   3'- -CCGGUUGCa------GCGGUUGCCCgaGUucu -5'
12359 5' -55.3 NC_003324.1 + 20783 0.7 0.501207
Target:  5'- cGGcCCGugGUCcgGCgCAACGGaGCUCgAAGAg -3'
miRNA:   3'- -CC-GGUugCAG--CG-GUUGCC-CGAG-UUCU- -5'
12359 5' -55.3 NC_003324.1 + 20264 0.7 0.490938
Target:  5'- aGCCGGCGUCau--ACGGGCUCAgcGGGc -3'
miRNA:   3'- cCGGUUGCAGcgguUGCCCGAGU--UCU- -5'
12359 5' -55.3 NC_003324.1 + 32367 0.7 0.490938
Target:  5'- aGGCCGuUGUCGCCAGCGuGUUCucuGGc -3'
miRNA:   3'- -CCGGUuGCAGCGGUUGCcCGAGuu-CU- -5'
12359 5' -55.3 NC_003324.1 + 25171 0.71 0.460744
Target:  5'- cGCCAACauccagaCGCCAGuCGGGUUUGAGAa -3'
miRNA:   3'- cCGGUUGca-----GCGGUU-GCCCGAGUUCU- -5'
12359 5' -55.3 NC_003324.1 + 34274 0.71 0.44117
Target:  5'- gGGCCGAUG-CGUCAGCcucGGCUuCGAGAc -3'
miRNA:   3'- -CCGGUUGCaGCGGUUGc--CCGA-GUUCU- -5'
12359 5' -55.3 NC_003324.1 + 51725 0.73 0.326556
Target:  5'- aGGCCGACGcaaUCGCCGA-GGGCgcCAAGc -3'
miRNA:   3'- -CCGGUUGC---AGCGGUUgCCCGa-GUUCu -5'
12359 5' -55.3 NC_003324.1 + 17726 0.75 0.241724
Target:  5'- cGCCAACGUCGUCGAuauccuCGGGCcCGAGc -3'
miRNA:   3'- cCGGUUGCAGCGGUU------GCCCGaGUUCu -5'
12359 5' -55.3 NC_003324.1 + 31874 0.78 0.15798
Target:  5'- cGCCGACGUUGCCGaauACGGGCcCgAAGAg -3'
miRNA:   3'- cCGGUUGCAGCGGU---UGCCCGaG-UUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.