miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12361 5' -58.6 NC_003324.1 + 24575 0.66 0.53835
Target:  5'- -gUCACCGcugCgGGCgACCAG-CGCAGg -3'
miRNA:   3'- aaGGUGGCua-GgCCG-UGGUCaGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 1516 0.66 0.517487
Target:  5'- -gCCAgCGAggaUCCGGCGgCAGUggugCGCGGc -3'
miRNA:   3'- aaGGUgGCU---AGGCCGUgGUCA----GCGUC- -5'
12361 5' -58.6 NC_003324.1 + 7693 0.66 0.517487
Target:  5'- -aCCGCCGAccCCGGaaaCACCGG-CGCGa -3'
miRNA:   3'- aaGGUGGCUa-GGCC---GUGGUCaGCGUc -5'
12361 5' -58.6 NC_003324.1 + 4405 0.66 0.507177
Target:  5'- gUUCuUGCCGAUCUGGCGCauguuGUgCGCGGu -3'
miRNA:   3'- -AAG-GUGGCUAGGCCGUGgu---CA-GCGUC- -5'
12361 5' -58.6 NC_003324.1 + 18153 0.67 0.486827
Target:  5'- gUUUCGCCGAcaCCGGCAa-GGUCGUGGc -3'
miRNA:   3'- -AAGGUGGCUa-GGCCGUggUCAGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 11753 0.67 0.476797
Target:  5'- gUCaauGCCGugcCCGGC-CCGGUCGCGc -3'
miRNA:   3'- aAGg--UGGCua-GGCCGuGGUCAGCGUc -5'
12361 5' -58.6 NC_003324.1 + 43396 0.67 0.476797
Target:  5'- -aCCGCCGAUCUGaC-CgCAGUCGUGGg -3'
miRNA:   3'- aaGGUGGCUAGGCcGuG-GUCAGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 32391 0.67 0.466871
Target:  5'- aUCCGgaGAUgCGGCGCCg--CGCAGa -3'
miRNA:   3'- aAGGUggCUAgGCCGUGGucaGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 33258 0.67 0.465885
Target:  5'- uUUCgACCGGUUcaaggagCGGUGCCAGUUGguGu -3'
miRNA:   3'- -AAGgUGGCUAG-------GCCGUGGUCAGCguC- -5'
12361 5' -58.6 NC_003324.1 + 30064 0.67 0.457053
Target:  5'- -gCCGCCGGUCgCGaCACCGGcCGCu- -3'
miRNA:   3'- aaGGUGGCUAG-GCcGUGGUCaGCGuc -5'
12361 5' -58.6 NC_003324.1 + 14467 0.67 0.447347
Target:  5'- aUCgGCgGAccuugCUGGCACC-GUCGCGGa -3'
miRNA:   3'- aAGgUGgCUa----GGCCGUGGuCAGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 31108 0.67 0.437756
Target:  5'- --aCGCCGA-CC-GCGCCGGUCGCu- -3'
miRNA:   3'- aagGUGGCUaGGcCGUGGUCAGCGuc -5'
12361 5' -58.6 NC_003324.1 + 15161 0.68 0.40971
Target:  5'- -gCCGCCGAUCUccauCGCCGGUucCGCAGa -3'
miRNA:   3'- aaGGUGGCUAGGcc--GUGGUCA--GCGUC- -5'
12361 5' -58.6 NC_003324.1 + 48729 0.68 0.40971
Target:  5'- -gCCaACCGcgUCGGCGCCAGcaggcUGCAGg -3'
miRNA:   3'- aaGG-UGGCuaGGCCGUGGUCa----GCGUC- -5'
12361 5' -58.6 NC_003324.1 + 53289 0.69 0.364691
Target:  5'- -cCCGCCGGUCgCGGCuugagaaagaacuAUCGGUCGCc- -3'
miRNA:   3'- aaGGUGGCUAG-GCCG-------------UGGUCAGCGuc -5'
12361 5' -58.6 NC_003324.1 + 38352 0.69 0.348817
Target:  5'- --gCACCGGggCGGCGCUGGUCGCc- -3'
miRNA:   3'- aagGUGGCUagGCCGUGGUCAGCGuc -5'
12361 5' -58.6 NC_003324.1 + 18350 0.69 0.348817
Target:  5'- gUCgGCCGAuUCCGuCAgCGGUCGCGGc -3'
miRNA:   3'- aAGgUGGCU-AGGCcGUgGUCAGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 3588 0.69 0.331852
Target:  5'- --aCGCCGAUCCaguggagcaaauuGGCAUCcguGGUCGCGGa -3'
miRNA:   3'- aagGUGGCUAGG-------------CCGUGG---UCAGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 4548 0.7 0.308683
Target:  5'- ---aGCCGcAUCCGGCGCCugaaucgGGUUGCAGc -3'
miRNA:   3'- aaggUGGC-UAGGCCGUGG-------UCAGCGUC- -5'
12361 5' -58.6 NC_003324.1 + 23845 0.75 0.152731
Target:  5'- -gCCGCCGAaucggaccccgauuUCCGGCGCaacGUCGCAGc -3'
miRNA:   3'- aaGGUGGCU--------------AGGCCGUGgu-CAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.