Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12364 | 3' | -56 | NC_003324.1 | + | 7556 | 0.68 | 0.513268 |
Target: 5'- aGACcuGCCccgAGGUCGGGauuuuggcucUCGGGCAGCAc -3' miRNA: 3'- aCUG--CGG---UCUAGUCC----------AGCUCGUCGUc -5' |
|||||||
12364 | 3' | -56 | NC_003324.1 | + | 5453 | 0.75 | 0.223098 |
Target: 5'- cGACGCUGGGUCAGG-CaGGCGGCGu -3' miRNA: 3'- aCUGCGGUCUAGUCCaGcUCGUCGUc -5' |
|||||||
12364 | 3' | -56 | NC_003324.1 | + | 4539 | 0.69 | 0.492461 |
Target: 5'- cGGCGCCuGaAUCGGGUU--GCAGCAu -3' miRNA: 3'- aCUGCGGuC-UAGUCCAGcuCGUCGUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home