Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 12364 | 5' | -62.3 | NC_003324.1 | + | 41033 | 0.73 | 0.122967 |
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Target: 5'- -cUCGCUGuUCGAGUGUGAGCC-GGCg -3' miRNA: 3'- uaGGCGGCuAGCUCGCGCUCGGgCCG- -5' |
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| 12364 | 5' | -62.3 | NC_003324.1 | + | 17719 | 0.73 | 0.126285 |
|
Target: 5'- -gUCGUCGAuauccUCGGGCcCGAGCUCGGCg -3' miRNA: 3'- uaGGCGGCU-----AGCUCGcGCUCGGGCCG- -5' |
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| 12364 | 5' | -62.3 | NC_003324.1 | + | 14533 | 0.73 | 0.124284 |
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Target: 5'- gGUCCGCCGAUgcuuggacgccggcaUGGGCccaGAGCCgGGCg -3' miRNA: 3'- -UAGGCGGCUA---------------GCUCGcg-CUCGGgCCG- -5' |
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| 12364 | 5' | -62.3 | NC_003324.1 | + | 41721 | 0.75 | 0.091462 |
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Target: 5'- -gCCGCCGAcgaGAGCggGCGAGCCgUGGCa -3' miRNA: 3'- uaGGCGGCUag-CUCG--CGCUCGG-GCCG- -5' |
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| 12364 | 5' | -62.3 | NC_003324.1 | + | 56291 | 0.75 | 0.084297 |
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Target: 5'- -gCCGCCGAUCGAGCGauaGGCgaGGCu -3' miRNA: 3'- uaGGCGGCUAGCUCGCgc-UCGggCCG- -5' |
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| 12364 | 5' | -62.3 | NC_003324.1 | + | 8220 | 0.76 | 0.077669 |
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Target: 5'- -aUCGCa-GUCGAGCGCGcagcuGCCCGGCg -3' miRNA: 3'- uaGGCGgcUAGCUCGCGCu----CGGGCCG- -5' |
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| 12364 | 5' | -62.3 | NC_003324.1 | + | 34433 | 0.78 | 0.059 |
|
Target: 5'- --aCGuuGAggcuuaCGAGCGCGAGCUCGGCa -3' miRNA: 3'- uagGCggCUa-----GCUCGCGCUCGGGCCG- -5' |
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| 12364 | 5' | -62.3 | NC_003324.1 | + | 29350 | 1.09 | 0.000222 |
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Target: 5'- aAUCCGCCGAUCGAGCGCGAGCCCGGCg -3' miRNA: 3'- -UAGGCGGCUAGCUCGCGCUCGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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