miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12365 3' -57 NC_003324.1 + 8176 0.65 0.640499
Target:  5'- gGGC-CAGUCCcugcucacugccCGGCGGCgcgcgCCugGCa -3'
miRNA:   3'- -CCGuGUCGGGu-----------GUCGUCGaa---GGugCG- -5'
12365 3' -57 NC_003324.1 + 30555 0.66 0.631755
Target:  5'- cGCGCuGCUCuacucCAGCGGCgaUCAUGCu -3'
miRNA:   3'- cCGUGuCGGGu----GUCGUCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 26731 0.66 0.631755
Target:  5'- gGGCGCgGGCCUuuucuGCAGCAuCUUCCGUGa -3'
miRNA:   3'- -CCGUG-UCGGG-----UGUCGUcGAAGGUGCg -5'
12365 3' -57 NC_003324.1 + 27646 0.66 0.630662
Target:  5'- uGCGCgaaaauaugcgugAGCCgGCAGCcgAGCccgaaacaggUCCGCGCg -3'
miRNA:   3'- cCGUG-------------UCGGgUGUCG--UCGa---------AGGUGCG- -5'
12365 3' -57 NC_003324.1 + 28722 0.66 0.620826
Target:  5'- aGGCGCcgaaaCCUGCucuGCAGUUcCCGCGCc -3'
miRNA:   3'- -CCGUGuc---GGGUGu--CGUCGAaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 52203 0.66 0.620826
Target:  5'- cGGCACcGCCCgauacuaccAUGGCGGgUUCgGCGg -3'
miRNA:   3'- -CCGUGuCGGG---------UGUCGUCgAAGgUGCg -5'
12365 3' -57 NC_003324.1 + 23528 0.66 0.609907
Target:  5'- cGGCACGaucgguGcCCCACAGCguggcGGCgggCGCGCu -3'
miRNA:   3'- -CCGUGU------C-GGGUGUCG-----UCGaagGUGCG- -5'
12365 3' -57 NC_003324.1 + 14002 0.66 0.609907
Target:  5'- cGGCACucGCuCCGCAGCA--UUCCAUa- -3'
miRNA:   3'- -CCGUGu-CG-GGUGUCGUcgAAGGUGcg -5'
12365 3' -57 NC_003324.1 + 48202 0.66 0.597918
Target:  5'- uGCGCagguuguacuugaAGUCCGCuucgAGCAGCagCCACGUc -3'
miRNA:   3'- cCGUG-------------UCGGGUG----UCGUCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 48831 0.66 0.588134
Target:  5'- aGCGCuucgcugauGGCCUGCAGCcuGCUggcgCCgACGCg -3'
miRNA:   3'- cCGUG---------UCGGGUGUCGu-CGAa---GG-UGCG- -5'
12365 3' -57 NC_003324.1 + 30426 0.67 0.577298
Target:  5'- gGGCcaGCuGCUCGC-GCGGgaUCUGCGCa -3'
miRNA:   3'- -CCG--UGuCGGGUGuCGUCgaAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 54443 0.67 0.577298
Target:  5'- gGGuCAUAGCCgGCGGCgagagcggaaAGCUUgCC-CGCc -3'
miRNA:   3'- -CC-GUGUCGGgUGUCG----------UCGAA-GGuGCG- -5'
12365 3' -57 NC_003324.1 + 21300 0.67 0.577298
Target:  5'- cGCGCcgucGCCUuCGGCAGCUcgaaagCCAgGCg -3'
miRNA:   3'- cCGUGu---CGGGuGUCGUCGAa-----GGUgCG- -5'
12365 3' -57 NC_003324.1 + 42242 0.67 0.577298
Target:  5'- cGGCaaguacgaucGCGGCCCAUGGUcuguuGCUgaUCCcCGCg -3'
miRNA:   3'- -CCG----------UGUCGGGUGUCGu----CGA--AGGuGCG- -5'
12365 3' -57 NC_003324.1 + 29327 0.67 0.577298
Target:  5'- cGGCGaugcaGGCCCgaACAGCcGCcgUCUugGUg -3'
miRNA:   3'- -CCGUg----UCGGG--UGUCGuCGa-AGGugCG- -5'
12365 3' -57 NC_003324.1 + 20771 0.67 0.577298
Target:  5'- cGGCGCaacggAGCUCGaagAGaCGGCUUCCAaGCa -3'
miRNA:   3'- -CCGUG-----UCGGGUg--UC-GUCGAAGGUgCG- -5'
12365 3' -57 NC_003324.1 + 31319 0.67 0.577298
Target:  5'- aGUGCGGCCgGCGGC-GCUggCgCugGCg -3'
miRNA:   3'- cCGUGUCGGgUGUCGuCGAa-G-GugCG- -5'
12365 3' -57 NC_003324.1 + 2275 0.67 0.577298
Target:  5'- aGGUuuuuccuCGGCCCcgugAGCAGCUcCUGCGCu -3'
miRNA:   3'- -CCGu------GUCGGGug--UCGUCGAaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 19527 0.67 0.566506
Target:  5'- aGGC---GUCCAuCAGCcGCUUCaCGCGCa -3'
miRNA:   3'- -CCGuguCGGGU-GUCGuCGAAG-GUGCG- -5'
12365 3' -57 NC_003324.1 + 49487 0.67 0.566506
Target:  5'- aGGUGcCGGUCCGCaacgagGGCGGCaUUCugGCa -3'
miRNA:   3'- -CCGU-GUCGGGUG------UCGUCGaAGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.