Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12365 | 3' | -57 | NC_003324.1 | + | 8176 | 0.65 | 0.640499 |
Target: 5'- gGGC-CAGUCCcugcucacugccCGGCGGCgcgcgCCugGCa -3' miRNA: 3'- -CCGuGUCGGGu-----------GUCGUCGaa---GGugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 30555 | 0.66 | 0.631755 |
Target: 5'- cGCGCuGCUCuacucCAGCGGCgaUCAUGCu -3' miRNA: 3'- cCGUGuCGGGu----GUCGUCGaaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 26731 | 0.66 | 0.631755 |
Target: 5'- gGGCGCgGGCCUuuucuGCAGCAuCUUCCGUGa -3' miRNA: 3'- -CCGUG-UCGGG-----UGUCGUcGAAGGUGCg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 27646 | 0.66 | 0.630662 |
Target: 5'- uGCGCgaaaauaugcgugAGCCgGCAGCcgAGCccgaaacaggUCCGCGCg -3' miRNA: 3'- cCGUG-------------UCGGgUGUCG--UCGa---------AGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 52203 | 0.66 | 0.620826 |
Target: 5'- cGGCACcGCCCgauacuaccAUGGCGGgUUCgGCGg -3' miRNA: 3'- -CCGUGuCGGG---------UGUCGUCgAAGgUGCg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 28722 | 0.66 | 0.620826 |
Target: 5'- aGGCGCcgaaaCCUGCucuGCAGUUcCCGCGCc -3' miRNA: 3'- -CCGUGuc---GGGUGu--CGUCGAaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 14002 | 0.66 | 0.609907 |
Target: 5'- cGGCACucGCuCCGCAGCA--UUCCAUa- -3' miRNA: 3'- -CCGUGu-CG-GGUGUCGUcgAAGGUGcg -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 23528 | 0.66 | 0.609907 |
Target: 5'- cGGCACGaucgguGcCCCACAGCguggcGGCgggCGCGCu -3' miRNA: 3'- -CCGUGU------C-GGGUGUCG-----UCGaagGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 48202 | 0.66 | 0.597918 |
Target: 5'- uGCGCagguuguacuugaAGUCCGCuucgAGCAGCagCCACGUc -3' miRNA: 3'- cCGUG-------------UCGGGUG----UCGUCGaaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 48831 | 0.66 | 0.588134 |
Target: 5'- aGCGCuucgcugauGGCCUGCAGCcuGCUggcgCCgACGCg -3' miRNA: 3'- cCGUG---------UCGGGUGUCGu-CGAa---GG-UGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 30426 | 0.67 | 0.577298 |
Target: 5'- gGGCcaGCuGCUCGC-GCGGgaUCUGCGCa -3' miRNA: 3'- -CCG--UGuCGGGUGuCGUCgaAGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 20771 | 0.67 | 0.577298 |
Target: 5'- cGGCGCaacggAGCUCGaagAGaCGGCUUCCAaGCa -3' miRNA: 3'- -CCGUG-----UCGGGUg--UC-GUCGAAGGUgCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 54443 | 0.67 | 0.577298 |
Target: 5'- gGGuCAUAGCCgGCGGCgagagcggaaAGCUUgCC-CGCc -3' miRNA: 3'- -CC-GUGUCGGgUGUCG----------UCGAA-GGuGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 2275 | 0.67 | 0.577298 |
Target: 5'- aGGUuuuuccuCGGCCCcgugAGCAGCUcCUGCGCu -3' miRNA: 3'- -CCGu------GUCGGGug--UCGUCGAaGGUGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 31319 | 0.67 | 0.577298 |
Target: 5'- aGUGCGGCCgGCGGC-GCUggCgCugGCg -3' miRNA: 3'- cCGUGUCGGgUGUCGuCGAa-G-GugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 29327 | 0.67 | 0.577298 |
Target: 5'- cGGCGaugcaGGCCCgaACAGCcGCcgUCUugGUg -3' miRNA: 3'- -CCGUg----UCGGG--UGUCGuCGa-AGGugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 42242 | 0.67 | 0.577298 |
Target: 5'- cGGCaaguacgaucGCGGCCCAUGGUcuguuGCUgaUCCcCGCg -3' miRNA: 3'- -CCG----------UGUCGGGUGUCGu----CGA--AGGuGCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 21300 | 0.67 | 0.577298 |
Target: 5'- cGCGCcgucGCCUuCGGCAGCUcgaaagCCAgGCg -3' miRNA: 3'- cCGUGu---CGGGuGUCGUCGAa-----GGUgCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 49487 | 0.67 | 0.566506 |
Target: 5'- aGGUGcCGGUCCGCaacgagGGCGGCaUUCugGCa -3' miRNA: 3'- -CCGU-GUCGGGUG------UCGUCGaAGGugCG- -5' |
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12365 | 3' | -57 | NC_003324.1 | + | 19527 | 0.67 | 0.566506 |
Target: 5'- aGGC---GUCCAuCAGCcGCUUCaCGCGCa -3' miRNA: 3'- -CCGuguCGGGU-GUCGuCGAAG-GUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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